Job Description P23847 Confidence 100.00% Date Thu Jan 5 11:39:55 GMT 2012 Rank 5 Aligned Residues 482 % Identity 26% Template d1zlqa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	L	V	Y	C	S	E	G	S	P	E	G	F	N	P	Q	L	F	T	S	G	T	T	Y	D	A	S	S	V	P	L	Y	N	R	L	V	E	F	K	I	G	T	T	E	V	I	P	G	L	A	E	K	W	E	V	S	E	D	G	K	T	Y	T	F	H	L	R	K	G	V	K	W	H	D	N	K	E	F
Query Conservation
Alig confidence																												.	.														.																																					.	.
Template Conservation																												.	.														.																																					.	.
Template Sequence		P	D	E	I	T	T	A	W	P	V	N	V	G	P	L	N	P	H	L	Y	T	P	N	Q	M	F	.	.	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	.	A	D	G	S	V	I	P	W	L	A	K	S	W	T	H	S	E	D	G	K	T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	.	.
Template Known Secondary structure										S	S				S			T	T			T	T	S				.	.									S					.	T	T	S					S	S								T	T	S									S	S		B		T	T	S		.	.
Template Predicted Secondary structure																												.	.														.																																					.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	T	R	E	L	N	A	D	D	V	V	F	S	F	D	R	Q	K	N	A	Q	N	P	Y	H	K	V	S	G	G	S	Y	E	Y	F	E	G	M	G	L	P	E	L	I	S	E	V	K	K	V	D	D	N	T	V	Q	F	V	L	T	R	P	E	A	P	F	L	A	D	L	A	M	D	F	A	S	I	L	S
Query Conservation
Alig confidence		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	P	F	D	A	E	A	A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	.	.	.	.	.	.	.	.	.	.	.	E	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	A	L	P	R	P	F	R	F	I
Template Known Secondary structure		.	.	.	.	B															T	T	G	G	G	G	T	T	S	.	.	.	.	.	.	.	.	.	.	.	T											S	S	S	S							S	S			T	T						T	S	S	S	S	S
Template Predicted Secondary structure		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	Y	A	D	A	M	M	K	A	G	T	P	E	K	L	D	L	N	P	I	G	T	G	P	F	Q	L	Q	Q	Y	Q	K	D	S	R	I	R	Y	K	A	F	D	G	Y	W	G	T	K	P	Q	I	D	T	L	V	F	S	I	T	P	D	A	S	V	R	Y	A	K	L	Q	K	N	E	C	Q	V	M	P	Y
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		A	.	.	.	P	S	Q	F	K	N	H	E	T	M	N	G	I	K	A	P	I	G	T	G	P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	G	E	K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G
Template Known Secondary structure			.	.	.	G	G	G			T	T							S	S				S	S	S								T	T	T								T	T		S	S				S																					T	T	S		S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		143				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
						268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	N	P	A	D	I	A	R	M	K	Q	D	K	S	I	N	L	M	E	M	P	G	L	N	V	G	Y	L	S	Y	N	V	Q	K	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	V	S	A	K	N	L	I	P	P	T	M	W
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		N	E	G	L	L	P	L	D	T	F	A	R	F	S	Q	N	P	A	Y	H	T	Q	L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P
Template Known Secondary structure		S	T	T	S	S												T	T	S																	T	T	S	T	T	T	T	S																					S	T	T		S					S	S	S		T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.									.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.
Query Sequence		G	Y	N	D	D	V	Q	D	Y	T	Y	D	P	E	K	A	K	A	L	L	K	E	A	G	L	E	K	G	F	S	I	.	.	.	.	.	.	.	.	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	G	V	Q	A	K	I	V	T	Y	E	W	G
Query Conservation																																	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	N	L	G	L	K	P	S	Q	Y	D	P	Q	K	A	K	A	L	L	E	K	A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S
Template Known Secondary structure		T																						T	T		B			T	T		S	S				T	T											T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	L	K	R	A	K	D	G	E	H	Q	T	V	M	M	G	W	T	G	D	N	G	D	P	D	N	F	F	A	T	L	F	S	C	A	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	T	D	D	H	N	K	R	V	E	L	Y	K	Q	A	Q	V	V	M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	Y	A	R	Q	R	D	G	R	F	G	M	I	F	H	R	T	W	G	A	P	Y	D	P	H	A	F	L	S	S	M	R	V	P	S	H	A	D	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H
Template Known Secondary structure										T			S									T	T	T	T	T						G	G	G		T	T	S							T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		D	Q	A	P	A	L	I	I	A	H	S	T	V	F	E	P	V	R	K	E	V	K	G	Y	V	V	D	P	L	G	K	.	H	H	F	E	N	V
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		D	E	A	V	Y	L	P	I	S	Y	I	S	M	M	V	V	S	K	P	E	L	G	N	I	P	Y	A	P	I	A	T	E	I	P	F	E	Q	I
Template Known Secondary structure			T	T																G	G	G							S	S	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.