Job Description P23847 Confidence 100.00% Date Thu Jan 5 11:39:55 GMT 2012 Rank 8 Aligned Residues 480 % Identity 26% Template d1uqwa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.72

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	K	T	L	V	Y	C	S	E	G	S	P	E	G	F	N	P	Q	L	F	T	S	G	T	T	Y	D	A	S	S	V	P	L	Y	N	R	L	V	E	F	K	I	G	T	T	E	V	I	P	G	L	A	E	K	W	E	V	S	E	D	G	K	T	Y	T	F	H	L	R	K	G	V	K	W	H	D	N	K	E
Query Conservation
Alig confidence																																.												.																																					.
Template Conservation																																.												.																																					.
Template Sequence		A	A	K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	V	A	.	K	S	F	Y	Q	G	L	F	G	L	D	.	K	E	X	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	.
Template Known Secondary structure											S	S					S		G	G	G			S								.	T	T	T				S					.	T	T	S					S	S								T	T	S	S								T	T		B		T	T	S		.
Template Predicted Secondary structure																																.												.																																					.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	P	T	R	E	L	N	A	D	D	V	V	F	S	F	D	R	Q	K	N	A	Q	N	P	Y	H	K	V	S	G	G	S	Y	E	Y	F	E	G	M	G	L	P	E	L	I	S	E	V	K	K	V	D	D	N	T	V	Q	F	V	L	T	R	P	E	A	P	F	L	A	D	L	A	M	D	F	A	S	I	L
Query Conservation
Alig confidence		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	D	F	N	A	A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	H	.	.	.	.	.	.	.	.	.	.	.	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	X	I
Template Known Secondary structure		.	.	.	.	.	B														T		G	G	G			T	T	G	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	T									T	T							S	S			T	T						T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.												.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		S	K	E	Y	A	D	A	M	M	K	A	G	T	P	E	K	L	D	L	N	P	I	G	T	G	P	F	Q	L	Q	Q	Y	Q	K	D	S	R	I	R	Y	K	A	F	D	G	Y	W	.	G	T	K	P	Q	I	D	T	L	V	F	S	I	T	P	D	A	S	V	R	Y	A	K	L	Q	K	N	E	C	Q	V	M
Query Conservation																																																	.
Alig confidence											.	.	.	.	.																																		.
Template Conservation											.	.	.	.	.
Template Sequence		S	P	A	A	L	E	K	Y	G	.	.	.	.	.	K	E	I	G	F	Y	P	V	G	T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	X	L	Q	T	G	E	A	Q	F	A
Template Known Secondary structure										G	.	.	.	.	.	G	G	T	T	T	S				S	S	S								T	T	T								T	T		S	S	T	T					S																				T	S		S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	P	N	P	A	D	I	A	R	M	K	Q	D	K	S	I	N	L	M	E	M	P	G	L	N	V	G	Y	L	S	Y	N	V	Q	K	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	V	S	A	K	N	L	I	P	P	T	M	W	G	Y
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		F	P	I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I	E	L	X	A	S	P	S	I	X	Q	R	Y	I	S	X	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	.	I	A	Y
Template Known Secondary structure			S													T	T																		T	T	S	T	G	G	G	S																						T	T						S	S	S	S		T	T	.	S	B	T
Template Predicted Secondary structure																																																																														.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		N	D	D	V	Q	D	Y	T	Y	D	P	E	K	A	K	A	L	L	K	E	A	G	L	E	K	G	F	S	I	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	G	V	Q	A	K	I	V	T	Y	E	W	G	E	Y	L	K	R	A	K	D	.	.
Query Conservation																																																																																.	.
Alig confidence																											.	.	.	.																																																		.	.
Template Conservation																											.	.	.	.
Template Sequence		A	Q	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	.	.	.	.	G	F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	X	D	A	G	Q	R	A	A	E	V	E	G	K	G
Template Known Secondary structure																							T		T	T	.	.	.	.												S	S	S															T	T																	T	T	S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
					424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																													.
Query SS confidence		.	.	.																													.
Query Sequence		.	.	.	G	E	H	Q	T	V	M	M	G	W	T	G	D	N	G	D	P	D	N	F	F	A	T	L	F	S	C	A	.	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	T	D	D	H	N	K	R	V	E	L	Y	K	Q	A	Q	V	V	M	H	D	Q	A	P
Query Conservation		.	.	.																													.
Alig confidence		.	.	.																													.
Template Conservation
Template Sequence		Q	K	E	S	G	V	R	X	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P
Template Known Secondary structure		T	T	T													T	T	S	B											G	G	G	T	T	T	T	S			T	T																T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	I	A	H	S	T	V	F	E	P	V	R	K	E	V	K	G	Y	V	V	D	P	L	G	K	H	H	F	E	N	V	S	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	I	P	L	V	V	E	K	L	V	S	A	H	S	K	N	L	T	G	F	W	I	X	P	D	T	G	F	S	F	E	D	A	D	L	Q
Template Known Secondary structure																T	T			S					T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.