Job Description P23847 Confidence 100.00% Date Thu Jan 5 11:39:55 GMT 2012 Rank 2 Aligned Residues 506 % Identity 51% Template c3tpaA_ PDB info PDB header:heme binding protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis Resolution 2.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	L	V	Y	C	S	E	G	S	P	E	G	F	N	P	Q	L	F	T	S	G	T	T	Y	D	A	S	S	V	P	L	Y	N	R	L	V	E	F	K	I	G	T	T	E	V	I	P	G	L	A	E	K	W	E	V	S	E	D	G	K	T	Y	T	F	H	L	R	K	G	V	K	W	H	D	N	K	E	F	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	L	V	N	C	I	A	T	A	P	M	K	L	S	P	A	I	T	N	D	A	N	D	F	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	A	G	K	I	E	V	E	P	G	L	A	E	R	W	E	I	S	E	D	G	L	V	Y	T	F	Y	L	R	Q	N	V	K	F	H	S	N	K	T	F	S
Template Known Secondary structure									S	S			S		S		G	G	G		S	S	G	G	G	G	G	G	T								S					T	T	S	S	S				S	S								T	T	S									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	R	E	L	N	A	D	D	V	V	F	S	F	D	R	Q	K	N	A	Q	N	P	Y	H	K	V	S	G	G	S	Y	E	Y	F	E	G	M	G	L	P	E	L	I	S	E	V	K	K	V	D	D	N	T	V	Q	F	V	L	T	R	P	E	A	P	F	L	A	D	L	A	M	D	F	A	S	I	L	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	R	P	L	N	A	D	D	V	V	F	S	F	Q	R	Q	A	D	K	N	H	P	Y	H	N	V	S	A	G	T	Y	F	Y	F	N	W	M	N	L	P	S	I	L	K	S	V	E	K	V	D	D	Y	T	V	K	I	T	L	N	K	P	N	T	P	F	I	T	T	V	A	M	D	F	L	S	I	Y	S	K
Template Known Secondary structure			S	S																	T	T	S	T	T	T	T	G	G	G									T	T													T	T							S	S			T	T					T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	A	D	A	M	M	K	A	G	T	P	E	K	L	D	L	N	P	I	G	T	G	P	F	Q	L	Q	Q	Y	Q	K	D	S	R	I	R	Y	K	A	F	D	G	Y	W	G	T	K	P	Q	I	D	T	L	V	F	S	I	T	P	D	A	S	V	R	Y	A	K	L	Q	K	N	E	C	Q	V	M	P	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	A	D	Q	L	L	A	Q	G	K	P	E	T	L	D	Q	Q	P	I	G	T	G	P	F	I	F	Q	T	N	Q	T	D	H	A	V	R	Y	T	A	N	V	D	Y	W	K	G	K	A	D	I	E	R	L	I	F	S	I	T	P	D	A	G	T	R	Y	A	K	L	K	A	G	E	C	D	V	I	D	F	P
Template Known Secondary structure										T	T		T	T					S				S	S	S					S	S			T	T								T	T		T	T				S		S																			T	T	S		S			S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	A	D	I	A	R	M	K	Q	D	K	S	I	N	L	M	E	M	P	G	L	N	V	G	Y	L	S	Y	N	V	Q	K	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	V	S	A	K	N	L	I	P	P	T	M	W	G	Y	N	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	S	D	I	A	Q	M	K	K	D	P	Q	I	N	L	L	E	R	E	G	L	N	L	A	Y	I	G	L	N	T	T	K	P	E	L	N	N	V	K	V	R	Q	A	L	H	H	A	T	D	K	K	A	I	V	D	A	V	Y	Q	G	G	G	T	V	A	T	N	P	F	P	D	A	V	L	G	Y	N	P	H
Template Known Secondary structure										T	T		T	T									S									T	T	S	T	T	T	T	S										T												T	T	S					S	S	S	S		T	T	S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	D	Y	T	Y	D	P	E	K	A	K	A	L	L	K	E	A	G	L	E	K	G	F	S	I	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	G	V	Q	A	K	I	V	T	Y	E	W	G	E	Y	L	K	R	A	K	D	G	E	H	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	Q	Y	E	F	N	L	E	K	A	K	A	L	L	A	E	A	G	Y	P	N	G	F	E	T	E	I	W	V	Q	P	V	V	R	P	S	N	P	N	P	R	R	T	A	E	I	I	Q	A	D	W	A	K	I	G	V	K	A	K	L	V	T	H	E	W	A	D	F	N	K	R	T	R	E	G	E	F	A	A
Template Known Secondary structure																			T	T		T	T										S	S		B	T	T	B	S																T	T																			T	T			S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	M	G	W	T	G	D	N	G	D	P	D	N	F	F	A	T	L	F	S	C	A	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	T	D	D	H	N	K	R	V	E	L	Y	K	Q	A	Q	V	V	M	H	D	Q	A	P	A	L	I	I	A	H	S	T	V
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		G	T	Y	G	W	T	S	R	N	G	D	P	D	N	F	L	F	P	L	F	S	Q	.	A	N	I	P	G	T	N	Y	S	R	W	T	D	E	K	F	E	A	L	L	A	S	A	A	Q	I	Q	D	T	Q	T	R	A	K	L	Y	Q	Q	A	V	E	I	F	Q	Q	N	S	P	I	I	P	F	A	H	S	I	N
Template Known Secondary structure									S	S			T										G	.	G	G	T	T	T	T		T	T																T																							S
Template Predicted Secondary structure																								.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	P	V	R	K	E	V	K	G	Y	V	V	D	P	L	G	K	H	H	F	E	N	V	S	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	P	L	N	K	R	V	Q	G	F	V	Q	N	P	F	G	Y	T	A	F	Y	G	V	S	L	K
Template Known Secondary structure							T	T			S					T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.