Job Description P23847 Confidence 100.00% Date Thu Jan 5 11:39:55 GMT 2012 Rank 20 Aligned Residues 214 % Identity 14% Template c3pamB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1 Resolution 2.31 Å

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		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	Y	L	S	Y	N	V	Q	K	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	V	S	A	K	N	L	I	P	P	T	M	W	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	X	G	F	V	F	N	T	R	R	T	L	F	K	D	K	R	V	R	Q	A	L	S	I	L	F	D	F	E	W	V	N	H	H	L	F	N	N	I	Y	T	R	T	E	G	Y	W	D	G	S	I	L	S	S	I	G	K	P	A	S	E	E	E	K	A	L	L	A	P	Y	P	D	A	V	L	P	E	V	X	D
Template Known Secondary structure									T	T	S	G	G	G	S	S																				T	T	T	T							S	S	S	T	T	S	T	T			S	S	S											T	T		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		Y	N	D	D	V	Q	D	Y	T	Y	D	P	E	K	A	K	A	L	L	K	E	A	G	L	E	K	G	F	S	.	.	.	.	.	I	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	G	V	Q	A	K	I	V	T	Y	E	W	G	E	Y	L	K
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.
Template Conservation
Template Sequence		G	S	W	R	I	S	K	D	R	L	N	A	Q	K	A	W	K	L	L	Q	E	A	G	F	T	K	K	N	N	R	L	I	A	P	N	G	L	P	F	Q	F	E	I	X	T	Q	S	L	E	E	E	K	V	A	L	A	F	Q	S	N	L	S	R	L	G	I	H	A	E	I	R	T	V	D	D	S	Q	Y	Q	N
Template Known Secondary structure		T																					T	T					T	T					T	T	S		B								S	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		R	A	K	D	G	E	H	Q	T	V	M	M	G	W	T	G	D	N	G	D	P	D	N	F	F	A	T	L	.	F	S	C	A	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	T	D	D	H	N	K	R	V	E	L	Y	K	Q	A	Q	V	V	M	H	D	Q	A
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		R	L	G	X	F	N	Y	D	X	I	I	G	K	L	K	N	S	L	S	P	G	N	E	Q	I	N	R	W	S	S	A	S	R	N	L	K	G	S	F	N	F	S	G	A	S	D	P	A	I	D	A	X	I	T	A	I	L	D	A	H	S	Q	V	D	F	I	A	A	V	R	A	L	D	R	I	L	I	S	G	S
Template Known Secondary structure						T			S										S	S			T	T											T		T	T		S		T	T																			S																			T
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		499	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	I	I	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Y	I	P	L	Y	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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