Job Description P23847 Confidence 100.00% Date Thu Jan 5 11:39:55 GMT 2012 Rank 21 Aligned Residues 213 % Identity 21% Template c3o6pA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein Resolution 1.65 Å

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		289	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350									.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																																																		.	.	.	.	.	.	.	.
Query SS confidence															.	.																																																		.	.	.	.	.	.	.	.
Query Sequence		G	L	N	V	G	Y	L	S	Y	N	V	Q	K	.	.	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	V	S	A	K	N	L	I	P	P	T	M	W	G	Y	N	D	D	V	Q	.	.	.	.	.	.	.	.	D	Y	T	Y	D	P	E	K
Query Conservation															.	.																																																		.	.	.	.	.	.	.	.
Alig confidence															.	.																																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	S	T	Q	Y	X	E	L	N	Q	R	D	E	K	S	P	F	R	N	A	N	L	R	K	A	I	S	Y	S	I	D	R	K	A	L	V	E	S	I	L	G	D	G	S	I	E	P	N	G	L	V	P	A	D	X	A	K	D	P	S	G	G	K	D	F	A	K	E	A	G	S	Q	I	E	Y	D	T	K	K
Template Known Secondary structure														S	T	T		G	G	G											T									T	T	T		S	S		B			S	S	S	S		T	T	S		B		S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		A	K	A	L	L	K	E	A	G	L	E	K	G	F	S	I	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	.	.	G	V	Q	A	K	I	V	T	Y	E	W	G	E	Y	L	K	R	A	K	D	G	E	H	Q	T	V	M	M	G	W	T	G	D
Query Conservation																																															.	.
Alig confidence																				.	.																										.	.
Template Conservation																				.	.
Template Sequence		A	K	E	Y	W	E	K	A	K	K	E	L	G	I	S	T	L	T	.	.	X	D	I	L	S	S	D	A	D	S	S	K	K	T	V	E	F	V	Q	G	S	I	Q	D	A	L	D	G	V	K	V	T	V	S	P	V	P	F	S	V	R	L	D	R	S	N	K	G	D	F	D	A	V	I	G	G	W	S	A	D
Template Known Secondary structure														T		S				.	.								S																		S	T	T																				T			S									S
Template Predicted Secondary structure																				.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.			.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		N	G	D	P	D	N	F	F	A	T	L	F	S	C	A	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	.	.	T	D	D	H	N	K	R	V	E	L	Y	K	Q	A	Q	V	V	M	H	D	Q	A	P	A	L	I	I	A	H	S	T
Query Conservation																																										.	.
Alig confidence													.	.	.	.																										.	.
Template Conservation													.	.	.	.
Template Sequence		Y	A	D	P	S	S	F	L	D	L	F	.	.	.	.	A	S	D	N	S	Y	N	R	G	R	Y	N	N	A	E	F	D	K	F	V	K	A	A	S	S	A	D	A	T	D	P	E	K	R	W	D	D	X	L	N	A	E	K	T	I	X	G	D	X	G	V	V	P	L	F	Q	K	S
Template Known Secondary structure		S	S		T					G	G	G	.	.	.	.	S	T	T		T	T		T	T																S	T	T																					T	T	S	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.					.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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