Job Description P23847 Confidence 100.00% Date Thu Jan 5 11:39:55 GMT 2012 Rank 15 Aligned Residues 477 % Identity 18% Template c2grvC_ PDB info PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Resolution 2.40 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70								.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																						.																						.	.	.	.	.	.	.															.
Query SS confidence																						.																						.	.	.	.	.	.	.															.
Query Sequence		T	L	V	Y	C	S	E	G	S	P	E	G	F	N	P	Q	L	F	T	S	.	G	T	T	Y	D	A	S	S	V	P	L	Y	N	R	L	V	E	F	K	I	G	.	.	.	.	.	.	.	T	T	E	V	I	P	G	L	A	E	K	W	E	V	.	S	E	D	G	K	T	Y	T	F	H	L	R	K	G	V	K
Query Conservation																						.																						.	.	.	.	.	.	.															.
Alig confidence																						.																						.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		Q	I	I	M	A	I	D	S	I	G	P	G	F	N	P	H	L	L	S	D	Q	S	P	V	N	A	A	I	A	S	L	V	L	P	S	S	F	R	P	V	P	D	P	T	S	P	T	G	S	R	W	E	L	D	T	T	L	L	E	S	A	E	V	T	Q	E	N	P	F	T	V	T	Y	K	I	R	P	E	A	Q
Template Known Secondary structure								S				S		S		T	T	B	G	G	G		S											S			S							T	T	S	T	T	S							T	T	T									T	T	T	T								T	T		B
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		W	H	D	N	K	E	F	K	P	T	R	E	L	N	A	D	D	V	V	F	S	F	D	R	Q	K	N	A	Q	N	P	Y	H	K	V	S	G	G	S	Y	E	Y	F	E	G	M	G	L	P	E	L	I	S	E	V	K	K	V	.	D	D	N	T	V	Q	F	V	L	T	R	P	E	A	P	F	L	A	D	L	A
Query Conservation																																																												.
Alig confidence							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	T	D	N	A	.	.	.	.	.	.	P	I	A	A	D	D	Y	W	Y	L	W	R	Q	M	V	S	Q	P	G	V	V	D	P	A	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	D	L	I	T	G	V	Q	S	V	E	G	G	K	Q	A	V	V	T	F	S	Q	P	Y	P	A	W	R	E	L	F	N
Template Known Secondary structure			T	T	S		.	.	.	.	.	.	B																	T	T	B	S			T	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G								T	T	T	T							S	S			T	T	G	G	G	S	S
Template Predicted Secondary structure							.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.													.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		M	D	F	A	S	I	L	S	K	E	Y	A	D	A	M	M	K	A	G	T	P	E	K	L	D	L	N	P	I	G	T	G	P	F	Q	L	Q	Q	Y	Q	K	D	.	S	R	I	R	Y	K	A	F	D	G	Y	W	G	T	K	P	Q	I	D	T	L	V	F	S	I	T	P	D	A	S	V	R	Y	A	K	L	Q
Query Conservation																																												.
Alig confidence			.	.	.	.																																						.
Template Conservation			.	.	.	.
Template Sequence		D	.	.	.	.	I	L	P	A	H	I	V	K	D	I	P	G	G	F	G	A	G	L	A	R	A	M	P	V	T	G	G	Q	F	R	V	E	T	I	D	P	Q	R	D	E	I	L	L	A	R	N	D	R	F	W	S	V	P	A	K	P	D	L	V	L	F	R	R	G	G	A	P	A	A	L	A	D	S	I	R
Template Known Secondary structure		S	.	.	.	.								T	T	S	T	T					T	T	S	S				S			S	S								T	T	T	T								T	T		S	S	S			S		S									S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		259	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.
Predicted Secondary structure										.																																																																		.	.	.
Query SS confidence										.																																																																		.	.	.
Query Sequence		K	N	E	C	Q	V	M	P	.	Y	P	N	P	A	D	I	A	R	M	K	Q	D	K	S	I	N	L	M	E	M	P	G	L	N	V	G	Y	L	S	Y	N	V	Q	K	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	.	.	.	V	S	A
Query Conservation										.																																																																		.	.	.
Alig confidence										.																																																																		.	.	.
Template Conservation
Template Sequence		N	G	D	T	Q	V	A	Q	V	H	G	G	A	A	T	F	A	Q	L	S	A	I	P	D	V	R	T	A	R	I	V	T	P	R	V	M	Q	L	T	L	R	A	Q	Q	P	K	L	A	D	P	Q	V	R	K	A	I	L	G	L	I	D	V	D	L	L	A	S	V	G	A	G	D	D	N	T	V	T	L	A	Q
Template Known Secondary structure			T	S																		T	S	T	T																		T	T	S	G	G	G		S											S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.
Query Sequence		K	N	L	I	P	P	T	M	W	G	Y	N	D	D	V	Q	D	Y	T	Y	D	P	E	K	A	K	A	L	L	K	E	A	G	L	E	K	G	.	.	.	.	.	.	.	.	F	S	I	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	G	V	Q
Query Conservation																																							.	.	.	.	.	.	.	.
Alig confidence																		.																					.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		A	Q	V	R	S	P	S	D	P	G	Y	V	P	T	A	P	.	P	A	M	T	R	D	D	A	L	E	L	L	R	D	A	G	Y	V	S	E	P	V	R	E	R	I	V	K	D	G	V	P	L	T	I	V	L	G	V	A	S	N	D	P	T	S	V	A	V	A	N	T	A	A	D	Q	L	R	N	V	G	I	D
Template Known Secondary structure			S	S	S		T	T	S	T	T							.															T	T													T	T											T	T																		T	T
Template Predicted Secondary structure																		.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	K	I	V	T	Y	E	W	G	E	Y	L	K	R	.	A	K	D	G	E	H	Q	T	V	M	M	G	W	T	G	D	N	G	D	P	D	N	F	F	A	T	L	F	S	C	A	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	T	D	D	H	N	K	R	V	E
Query Conservation																.
Alig confidence																.											.																																																	.	.
Template Conservation																											.																																																	.	.
Template Sequence		A	S	V	L	A	L	D	P	V	A	L	Y	G	D	A	L	V	N	N	R	V	D	A	V	V	.	G	W	R	Q	A	G	G	D	L	A	T	V	L	A	S	R	Y	G	C	R	A	L	Q	A	P	S	N	I	T	G	I	C	D	R	S	I	Q	P	R	I	D	A	A	L	D	G	T	D	.	.	D	I	A	D
Template Known Secondary structure															T	T	T	T	T	T			S				.						S	S												S	T	T					S		T	T	S				G	G	G									T	T	S	S	.	.
Template Predicted Secondary structure																											.																																																	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.		.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		L	Y	K	Q	A	Q	V	V	M	H	D	Q	A	P	A	L	I	I	A	H	S	T	V	F	E	P	V	R	K	E	V	K	G	Y	V	V	D	P	.	L	G	K	H	H	F	E	N	V
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		V	I	Q	A	V	E	P	R	L	W	N	M	A	T	V	L	P	I	L	Q	D	T	T	I	V	A	A	G	P	S	V	Q	N	V	S	L	T	G	A	V	P	V	G	I	V	G	D	A
Template Known Secondary structure													T																	T	T			S			S				T	T	T		S		T	T	G
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.