Job Description P75736 Confidence 100.00% Date Thu Jan 5 12:13:35 GMT 2012 Rank 29 Aligned Residues 248 % Identity 15% Template c3kdaB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cftr inhibitory factor (cif); PDBTitle: crystal structure of the cftr inhibitory factor cif with the h269a2 mutation Resolution 1.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		K	L	N	I	R	A	Q	T	A	Q	N	Q	H	N	N	S	P	I	V	L	V	H	G	L	F	G	S	L	D	N	L	G	V	L	A	R	D	L	V	N	D	H	N	I	I	Q	V	D	M	R	N	H	G	L	S	P	R	D	P	V	.	.	M	N	Y	P	A	M	A	Q	D	L	V	D	T	L	D	A	Q	Q
Query Conservation																																																														.	.
Alig confidence									.	.	.	.	.																																																	.	.
Template Conservation									.	.	.	.	.
Template Sequence		K	L	H	Y	V	K	G	.	.	.	.	.	G	Q	G	P	L	V	M	L	V	H	G	F	G	Q	T	W	Y	E	W	H	Q	L	M	P	E	L	A	K	R	F	T	V	I	A	P	D	L	P	G	L	G	Q	S	E	P	P	K	T	G	Y	S	G	E	Q	V	A	V	Y	L	H	K	L	A	R	Q	F	S	P
Template Known Secondary structure									.	.	.	.	.			S	S								T	T			G	G	G	G	T	T						T	T	T	S								T	T	S	T	T					S	S		S	S																S	S
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	K	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	A	S	D	R	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S	D	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	P	F	D	L	V	A	H	D	I	G	I	W	N	T	Y	P	M	V	V	K	N	Q	A	D	I	A	R	L	V	Y	M	E	A	P	I	P	D	A	R	I	Y	R	F	P	A	F	T	A	Q	G	E	S	L	V	W	H	F	S	F	F	A	A	D	D	R	L	A	E	T	L	I	A	G	K	E	R	F	F
Template Known Secondary structure		S	S								T					T	T							T	G	G	G								S	S			S	S	G	G	G	G	G	S		S			T	T				S	S	T								S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		Q	T	R	Q	Q	A	A	A	I	M	R	Q	H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	.	.	.	H	I	V	G	W	E	K	I	P	A	W	D	H	P	A	L	F	I	P	G	G	N	S	P	Y	V	S	E	Q	Y	R	D	D
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		L	E	H	F	I	K	S	H	A	S	N	T	E	V	F	S	E	R	L	L	D	L	Y	A	R	S	Y	A	K	P	H	S	L	N	A	S	F	E	Y	Y	R	A	L	N	E	S	V	R	Q	N	A	E	L	A	K	T	R	L	Q	M	P	T	M	T	L	A	G	G	G	A	G	G	M	G	T	F	Q	L	E	Q
Template Known Secondary structure									T		S	S	G	G	G	S													T	S													T												T	T	S		B		S									S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	Q	F	P	Q	A	R	A	H	V	I	A	G	A	G	H	W	V	H	A	E	K	P	D	A	V	L	R	A	I	R	R	Y	L	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	A	Y	A	E	D	V	E	G	H	V	L	P	G	C	G	H	W	L	P	E	E	C	A	A	P	M	N	R	L	V	I	D	F	L	S	R
Template Known Secondary structure				T	T	B	S	S							T	T			S						S													T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions