Job Description P75736 Confidence 99.36% Date Thu Jan 5 12:13:35 GMT 2012 Rank 172 Aligned Residues 233 % Identity 16% Template c3ed1E_ PDB info PDB header:hydrolase receptor Chain: E: PDB Molecule:gibberellin receptor gid1; PDBTitle: crystal structure of rice gid1 complexed with ga3 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure														.	.													.	.	.	.	.																.	.
Query SS confidence														.	.													.	.	.	.	.																.	.
Query Sequence		L	N	I	R	A	Q	T	A	Q	N	Q	H	.	.	N	N	S	P	I	V	L	V	H	G	L	F	.	.	.	.	.	G	S	L	D	N	L	G	V	L	A	R	D	L	V	N	.	.	D	H	N	I	I	Q	V	D	M	R	N	H	G	L	S	P	R	D	P	V	M	N	Y	P	A	M	A	Q	D	L	V	D
Query Conservation														.	.													.	.	.	.	.																.	.
Alig confidence														.	.													.	.	.	.	.																.	.
Template Conservation
Template Sequence		L	E	V	R	I	Y	R	A	D	A	P	A	A	E	P	F	P	V	I	I	F	F	H	G	G	S	F	V	H	S	S	A	S	S	T	I	Y	D	S	L	C	R	R	F	V	K	L	S	K	G	V	V	V	S	V	N	Y	R	R	A	P	E	H	R	Y	P	C	A	Y	D	D	G	W	T	A	L	K	W	V	M
Template Known Secondary structure														S	S											S	T	T	T	S			T	T	B															T	S										T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		74	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		T	L	D	A	Q	Q	I	D	.	.	K	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	A	S	D	R	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S	D	A	Q	T	R	Q	Q	A	A	A	I	M	R	Q
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		S	Q	P	F	M	R	S	A	Q	A	R	V	F	L	S	G	D	S	S	G	G	N	I	A	H	H	V	A	V	R	A	A	D	E	G	V	K	V	C	G	N	I	L	L	N	A	M	F	G	G	T	E	R	T	E	S	E	R	R	L	D	G	K	Y	F	V	T	L	Q	D	R	D	W	Y	W	K	A	Y	L	P
Template Known Secondary structure		T		T	T	T	B				B																								T	T				S												S	S									T	T	T	S	S														S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	H	I	V	G	W	E	K	I	P	A	W	D	H	P	A	L	F	I	P	G	G	N	S	P	Y	V	S	.	.	E	Q	Y	R	D	D	L	L	A	Q	F	P	Q	A	R	A	H	V	I
Query Conservation																																																													.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	H	P	A	C	N	P	F	G	P	N	G	R	R	L	G	G	L	P	F	A	K	S	L	I	I	V	S	G	L	D	L	T	C	D	R	Q	L	A	Y	A	D	A	L	R	E	D	G	H	H	V	K	V	V	Q	C
Template Known Secondary structure		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	T	T	T		T	T	S	T	T					T	T	S											T	T	S	T	T														T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.																				.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		A	G	A	G	H	W	V	H	A	.	.	.	.	E	K	P	D	A	V	L	R	A	I	R	R	Y	L	N	D
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.
Template Conservation
Template Sequence		E	N	A	T	V	G	F	Y	L	L	P	N	T	V	H	Y	H	E	V	M	E	E	I	S	D	F	L	N	A
Template Known Secondary structure		T	T			T	T	G	G	G	S	S		S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions