Job Description P75736 Confidence 99.65% Date Thu Jan 5 12:13:35 GMT 2012 Rank 137 Aligned Residues 197 % Identity 22% Template c3ds8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Resolution 1.80 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.							.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		N	N	S	P	I	V	L	V	H	G	L	F	G	S	L	D	N	L	G	V	L	A	R	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	D	H	N	I	I	Q	V	D	M	R	N	H	G	L	S	P	.	.	.	.	.	.	R	D	P	V	M	N	Y	P	A	M	A	Q	D	L	V
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	I	P	I	I	L	I	H	G	S	G	G	N	A	S	S	L	D	K	X	A	D	Q	L	X	N	E	Y	R	S	S	N	E	A	L	T	X	T	V	N	S	E	G	K	I	K	F	E	G	K	L	T	K	D	A	K	R	P	I	I	K	F	G	F	E	Q	N	Q	A	T	P	D	D	W	S	K	W	L	K
Template Known Secondary structure												T	T			T	T	T	T										T	T													T	T	T						S				T	T		S	S								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		73	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure								.	.	.	.																												.	.	.	.	.
Query SS confidence								.	.	.	.																												.	.	.	.	.
Query Sequence		D	T	L	D	A	Q	.	.	.	.	Q	I	D	K	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	A	S	D	R	.	.	.	.	.	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S	D	A	Q	T	R	Q
Query Conservation								.	.	.	.																												.	.	.	.	.
Alig confidence								.	.	.	.																												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	X	E	D	L	K	S	R	Y	G	F	T	Q	X	D	G	V	G	H	S	N	G	G	L	A	L	T	Y	Y	A	E	D	Y	A	G	D	K	T	V	P	T	L	R	K	L	V	A	I	G	S	P	F	N	D	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S								T													S	T	T		T	T	S										S			T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.
Query Sequence		Q	A	A	A	I	M	R	Q	H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	H	I	V	G	W	E	K	I	P	A	W	D	H	P	A	L	F	I	P	G	G	N	.	.	.	.	.	.	S	P	Y	V	S	E	Q	Y	R	D	D	L
Query Conservation																																																																.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	D	N	G	X	D	L	S	F	K	K	L	P	N	S	T	P	Q	X	D	Y	F	I	K	N	Q	T	E	V	S	P	D	L	E	V	L	A	I	A	G	E	L	S	E	D	N	P	T	D	G	I	V	P	T	I	S	S	L	A	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S		T	T		S	S		S	S											T	G	G	G	S		T	T										S	B	T	T	B		B		S	S	S	B					T	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		L	A	Q	F	P	Q	A	.	.	.	.	.	.	R	A	H	V	I	A	G	A	G	H	W	V	H	A	E	K	P	D	A	V	L	R	A	I	R	R	Y	L	N	D
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																		.
Template Conservation																																.
Template Sequence		R	L	F	X	P	G	S	A	K	A	Y	I	E	D	I	Q	V	G	E	D	A	V	H	Q	T	L	H	E	T	P	.	K	S	I	E	K	T	Y	W	F	L	E	K
Template Known Secondary structure		G	G	T	S	B	T	T	B	S									S	G	G	G		G	G	G	G	G	G	S		.												T
Template Predicted Secondary structure																																.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions