Job Description P75736 Confidence 99.19% Date Thu Jan 5 12:13:35 GMT 2012 Rank 194 Aligned Residues 218 % Identity 14% Template c3d0kA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis Resolution 1.83 Å

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		2	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.																		.	.	.	.	.	.	.	60	.
Predicted Secondary structure													.																														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	N	I	R	A	Q	T	A	Q	N	.	Q	H	N	N	S	P	I	V	L	V	H	G	L	F	G	S	L	D	N	L	G	V	L	A	R	D	L	V	N	.	.	D	H	N	I	I	Q	V	D	M	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	L	S	P	R	D	P	V
Query Conservation													.																														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	T	L	N	T	Y	R	P	Y	G	Y	T	P	D	R	P	V	V	V	V	Q	H	G	V	L	R	N	G	A	D	Y	R	D	F	W	I	P	A	A	D	R	H	K	L	L	I	V	A	P	T	F	S	D	E	I	W	P	G	V	E	S	Y	N	N	G	R	A	F	T	A	A	G	N	P	R	H	V	D	G
Template Known Secondary structure											T	T			T	T	S									T	T										T								T										T	T	T	S						T	T	T	T	T		B		T	T	S		B			G	G	G
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		M	N	Y	P	A	M	A	Q	D	L	V	D	T	L	D	A	Q	Q	I	D	.	.	K	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	A	S	D	R	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S	D	A
Query Conservation																						.	.
Alig confidence																						.	.																																																									.	.
Template Conservation																																																																																.	.
Template Sequence		W	T	Y	A	L	V	A	R	V	L	A	N	I	R	A	A	E	I	A	D	C	E	Q	V	Y	L	F	G	H	S	A	G	G	Q	F	V	H	R	L	X	S	S	Q	P	H	A	P	F	H	A	V	T	A	A	N	P	G	W	Y	T	L	P	T	F	E	H	R	F	P	E	G	L	D	G	V	G	L	T	.	.
Template Known Secondary structure		S	T	T													T	T	S				S	S							T													S		S	T	T		S						S		S	S				S	S	T	T	S	B	T	T	T	S	S	B	T	T	T			.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	R	Q	Q	A	A	A	I	M	R	Q	H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	H	I	V	G	W	E	K	I	P	A	W	D	H	P	A	L	F	I	P	G	G	N	S	P	Y	V	S	E	Q	Y	R	D	D	L	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	H	L	A	R	L	L	A	Y	P	X	T	I	L	A	G	D	Q	D	I	A	T	P	N	L	P	S	E	P	A	A	L	R	Q	G	P	H	R	Y	A	R	A	R	H	Y	Y	E	A	G	Q	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S								T	T							S			S					T	T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																														194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		Q	F	.	.	.	.	.	.	P	Q	A	R	A	H	V	I	A	G	A	G	H	W	V	H	A	E	K	P	D	A	V	L	R	A	I	R	R	Y	L	N
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.														.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		A	A	A	Q	R	G	L	P	F	G	W	Q	L	Q	V	V	P	G	I	G	H	.	.	.	.	D	G	Q	A	X	S	Q	V	C	A	S	L	W	F	D
Template Known Secondary structure							T											T	T			S	.	.	.	.															T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions