Job Description P75736 Confidence 99.27% Date Thu Jan 5 12:13:35 GMT 2012 Rank 183 Aligned Residues 216 % Identity 14% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure														.	.	.																			.	.										.																	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																			.	.										.																	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	N	I	R	A	Q	T	A	Q	N	.	.	.	Q	H	N	N	S	P	I	V	L	V	H	G	L	F	G	S	L	D	.	.	N	L	G	V	L	A	R	D	L	.	V	N	D	H	N	I	I	Q	V	D	M	R	N	H	G	L	.	.	.	.	.	.	.	.	.	S	P	R	D	P	V	M	N	Y	P
Query Conservation														.	.	.																			.	.										.																	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																			.	.										.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	V	P	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P	W	L	D	A	G	G	V	Y	A	V	A	N	L	R	G	G	G	E	Y	G	K	A	W	H	D	A	G	R	L	D	K	K	Q	N	V	F	D
Template Known Secondary structure												T	T				S	S												T	T									G	G	G						T	T									T	T	S	S	T	T							T	T	S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		A	M	A	Q	D	L	V	D	T	L	D	A	Q	Q	I	.	.	D	K	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	A	S	D	R	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S	D	A	Q	T	R	Q
Query Conservation																	.	.
Alig confidence																	.	.																																																								.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A	A	M	T	Q	R	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V	R	Y	H	L	F	G	S	G	R	T	W	I	P	E	Y	G	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T	S			G	G	G							T														G	G	G		S						S					T	T	T	G	G	G	S	T	T	G	G	G	G						.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		Q	A	A	A	I	M	R	Q	H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	H	I	V	G	W	E	K	I	P	A	W	D	H	.	.	P	A	L	F	I	P	G	G	N	S	P	Y	V	S	E	Q	Y	R	D	D	L	L	A	Q	F
Query Conservation																																																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	E	K	P	E	D	F	K	T	L	H	A	Y	S	P	Y	H	H	V	R	P	D	V	R	Y	P	A	L	L	M	M	A	A	D	H	D	D	R	V	D	P	M	H	A	R	K	F	V	A	A	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S												G	G	G				S	S												T	T		S	S	S		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																														580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		222	.	.								.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.
Predicted Secondary structure					.	.	.	.	.	.	.																					.	.
Query SS confidence					.	.	.	.	.	.	.																					.	.
Query Sequence		P	Q	A	.	.	.	.	.	.	.	R	A	H	V	I	A	G	A	G	H	W	V	H	A	E	K	P	D	A	V	.	.	L	R	A	I	R	R	Y	L
Query Conservation					.	.	.	.	.	.	.																					.	.
Alig confidence					.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		Q	N	S	P	G	N	P	A	T	A	L	L	R	I	E	A	N	A	G	H	G	G	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y	S	F	L
Template Known Secondary structure			T	S	T	T			S								T	T		B	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions