Job Description P75736 Confidence 98.99% Date Thu Jan 5 12:13:35 GMT 2012 Rank 209 Aligned Residues 216 % Identity 9% Template c1yr2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure														.																					.	.	.																								.	.	.	.	.	.	.	.	.
Query SS confidence														.																					.	.	.																								.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	N	I	R	A	Q	T	A	Q	N	.	Q	H	N	N	S	P	I	V	L	V	H	G	L	F	G	S	L	D	N	L	.	.	.	G	V	L	A	R	D	L	V	N	D	H	N	I	I	Q	V	D	M	R	N	H	G	L	.	.	.	.	.	.	.	.	.	S	P	R	D	P	V	M	N	Y	P	A	M
Query Conservation														.																					.	.	.																								.	.	.	.	.	.	.	.	.
Alig confidence														.																					.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	V	P	M	F	I	V	R	R	K	D	A	K	G	P	L	P	T	L	L	Y	G	Y	G	G	F	N	V	A	L	T	P	W	F	S	A	G	F	M	T	W	I	D	S	G	G	A	F	A	L	A	N	L	R	G	G	G	E	Y	G	D	A	W	H	D	A	G	R	R	D	K	K	Q	N	V	F	D	D	F
Template Known Secondary structure												T	T			S												T	T																T	T	T									T	T	S	S	T	T							T	T	S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		68	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		A	Q	D	L	V	D	T	L	D	A	Q	.	.	Q	I	D	K	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	A	S	D	R	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S	D	A	Q	T	R	Q	Q	A
Query Conservation													.	.
Alig confidence													.	.																																																											.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		I	A	A	G	E	W	L	I	A	N	G	V	T	P	R	H	G	L	A	I	E	G	G	S	N	G	G	L	L	I	G	A	V	T	N	Q	R	P	D	L	F	A	A	A	S	P	A	V	G	V	M	D	M	L	R	F	D	Q	F	T	A	G	R	Y	W	V	D	D	Y	G	Y	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	S	S		T	T								T														G	G	G		S						S					T	T	S	G	G	G	S	T	T	G	G	G	G							.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																					.	.																										.	.
Query SS confidence																																																					.	.																										.	.
Query Sequence		A	A	I	M	R	Q	H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	H	I	V	G	W	E	K	I	P	A	W	D	H	.	.	P	A	L	F	I	P	G	G	N	S	P	Y	V	S	E	Q	Y	R	D	D	L	L	A	Q	F	.	.
Query Conservation																																																					.	.																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																										.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	K	E	A	D	W	R	V	L	R	R	Y	S	P	Y	H	N	V	R	S	G	V	D	Y	P	A	I	L	V	T	T	A	D	T	D	D	R	V	V	P	G	H	S	F	K	Y	T	A	A	L	Q	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S									T	T		G	G	G				T	T	S											S			S	S	S		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
				222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	Q	A	R	A	H	V	I	A	G	A	G	H	W	V	H	A	E	K	P	D	A	V	L	R	A	I	R	R	Y	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		A	A	I	G	P	K	P	H	L	I	R	I	E	P	I	D	K	Q	I	E	E	T	A	D	V	Q	A	F	L	A	H	F	T
Template Known Secondary structure		S				S	S
Template Predicted Secondary structure
Template SS confidence
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions