Job Description P75736 Confidence 99.45% Date Thu Jan 5 12:13:35 GMT 2012 Rank 159 Aligned Residues 211 % Identity 11% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.											.	.	.	.	.																.																.	.	.	.	.
Query SS confidence																	.	.	.											.	.	.	.	.																.																.	.	.	.	.
Query Sequence		K	L	N	I	R	A	Q	T	A	Q	N	Q	H	N	N	.	.	.	S	P	I	V	L	V	H	G	L	F	.	.	.	.	.	G	S	L	D	N	L	G	V	L	A	R	D	L	V	N	.	D	H	N	I	I	Q	V	D	M	R	N	H	G	L	S	.	.	.	.	.	P	R	D	P	V	M	N	Y	P	A	M
Query Conservation																	.	.	.											.	.	.	.	.																.																.	.	.	.	.
Alig confidence																	.	.	.											.	.	.	.	.																.																.	.	.	.	.
Template Conservation
Template Sequence		N	L	P	M	Q	I	L	K	P	A	T	F	T	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T	K	L	L	H	E	V	R	R	R	L	G	L	L	E
Template Known Secondary structure						B			B		S	S			S	S	S												T	T											S								T	T										T	T		S	S	S							T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																	.	.	.	.	.	.																				.	.	.	.
Query Sequence		A	Q	D	L	V	D	T	L	D	A	Q	Q	I	D	K	.	.	.	.	.	.	A	T	F	I	G	H	S	M	G	G	K	A	V	M	A	L	T	A	L	.	.	.	.	A	S	D	R	I	D	K	L	V	A	I	D	I	A	P	V	D	Y	H	V	R	R	H	D	E	I	F	A	A	I	N	A	V	S	E	S
Query Conservation																	.	.	.	.	.	.																				.	.	.	.
Alig confidence																	.	.	.	.	.	.																				.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y	I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y	A	S	A	F	S	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	S	S	S												T													S	S	S	T	T					S						S					T	T	S	S	B						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		685	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		D	A	Q	T	R	Q	Q	A	A	A	I	M	R	Q	H	L	N	E	E	G	V	I	Q	F	L	L	K	S	F	V	D	G	E	W	R	F	N	V	P	V	L	W	D	Q	Y	P	H	I	V	G	W	E	K	I	P	A	W	D	.	H	P	A	L	F	I	P	G	G	N	S	P	Y	V	S	E	Q	Y	R	D	D
Query Conservation																																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S			S	S	T	T	T	S		T					T	S			S									T	T		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																		755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
		217	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure								.	.	.	.													.
Query SS confidence								.	.	.	.													.
Query Sequence		L	L	A	Q	F	P	.	.	.	.	Q	A	R	A	H	V	I	A	G	A	G	H	.	W	V	H	A	E	K	P	D	A	V	L	R	A	I	R	R	Y	L	N	D
Query Conservation								.	.	.	.													.
Alig confidence								.	.	.	.													.
Template Conservation
Template Sequence		L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E
Template Known Secondary structure									T	T									T	T			S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions