Return to main results Retrieve Phyre Job Id

Job DescriptionP03856
Confidence86.39%DateThu Jan 5 10:58:05 GMT 2012
Rank8Aligned Residues51
% Identity27%Templated1jhfa1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain LexA repressor, N-terminal DNA-binding domain
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90..
Predicted Secondary structure 




















Query SS confidence 






























































Query Sequence  SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGK
Query Conservation   

  
 


   
  
               
   

           
  

     
   
Alig confidence 























.........















...










Template Conservation   

 

  

 

       
  
.........




    
  
  
...
  

  

 
Template Sequence  ALTARQQEVFDLIRDHISQTGMPP. . . . . . . . . TRAEIAQRLGFRSPNA. . . AEEHLKALARK
Template Known Secondary structure 


SS

.........
TT
SS...T
Template Predicted Secondary structure 







.........





...
Template SS confidence 






























































   3......10.........20...... ...30.........40.. .......50...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions