Job Description P03856 Confidence 38.89% Date Thu Jan 5 10:58:05 GMT 2012 Rank 25 Aligned Residues 113 % Identity 13% Template c3nqoB_ PDB info PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution Resolution 2.20 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	L	S	R	D	Q	K	R	M	L	Y	L	F	V	D	Q	I	R	K	S	D	G	T	L	Q	E	H	D	G	I	C	E	I	H	V	A	K	Y	A	E	I	F	G	L	T	S	A	E	A	S	K	D	I	R	Q	A	L	K	S	F	A	G	K	E	V	V	F	Y	R	P	E	E	D	A	G	D	E	K	G
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	L	T	S	R	Q	Y	X	T	I	L	S	I	L	H	L	P	E	E	E	T	.	.	.	.	.	.	.	.	.	.	.	.	T	L	N	N	I	A	R	K	X	G	T	S	K	Q	N	.	.	.	.	I	N	R	L	V	A	N	L	E	K	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S													T	S		G	G	G		.	.	.	.	.	.	.	.	.	.	.	.										T	S					.	.	.	.											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.													.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	S	F	P	W	F	I	K	R	A	H	S	P	S	R	G	L	Y	S	V	H	I	N	P	Y	L	I	P	F	F	I	G	L	Q	N	R	F	T	Q	F	R	L	S	E	T	K	E	I	T	N	P	Y	A	M	R	L	Y	E	S	L	C	Q	Y	R	K	P	D	G
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	Y	V	D	V	I	P	S	P	H	D	K	R	A	I	N	V	K	V	T	D	L	G	K	K	V	X	V	T	C	S	R	T	G	I	N	F	X	A	D	V	F	H	E	F	T	K	D	E	L	E	T	L	W	S	L	L	K	K	X	Y	R	F	N	G
Template Known Secondary structure		.	.	.	.	.	S							S	S		T	T																													T	T	T																		T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions