Job Description P03856 Confidence 100.00% Date Thu Jan 5 10:58:05 GMT 2012 Rank 2 Aligned Residues 232 % Identity 19% Template c2nraC_ PDB info PDB header:replication/dna Chain: C: PDB Molecule:pi protein; PDBTitle: crystal structure of pi initiator protein in complex with iteron dna Resolution 3.10 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	P	R	I	V	Q	S	N	D	L	T	E	A	A	Y	S	L	S	R	D	Q	K	R	M	L	Y	L	F	V	D	Q	I	R	K	S	D	G	T	L	Q	E	H	D	G	I	C	E	I	H	V	A	K	Y	A	E	I	F	G	L	T	S	A	E	A	S	K	D	I	R	Q	A	L	K	S	F	A	G	K	E
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		K	K	T	K	I	R	H	R	N	E	L	N	H	T	L	A	Q	L	P	L	P	A	K	R	V	M	Y	M	A	L	A	L	I	D	S	K	E	P	L	E	R	G	R	V	.	.	F	K	I	R	A	E	D	L	A	A	L	A	K	I	T	P	S	L	A	Y	R	Q	L	K	E	G	G	K	L	L	G	A	S	K
Template Known Secondary structure		S	S							G	G	G							S														T	S		T	T	S				S	S			.	.													T																					B
Template Predicted Secondary structure																																														.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																						.	.	.
Query SS confidence														.	.	.																																						.	.	.
Query Sequence		V	V	F	Y	R	P	E	E	D	A	G	D	.	.	.	E	K	G	Y	E	S	F	P	W	F	I	K	R	A	H	S	P	S	R	G	L	Y	S	V	H	I	N	P	Y	L	I	P	F	F	I	G	L	.	.	.	Q	N	R	F	T	Q	F	R	L	S	E	T	K	E	I	T	N	P	Y	A	M	R	L	Y	E
Query Conservation														.	.	.																																						.	.	.
Alig confidence														.	.	.																																						.	.	.
Template Conservation
Template Sequence		I	S	L	R	G	D	D	I	I	A	L	A	K	E	L	N	S	E	E	L	D	L	N	I	I	E	W	I	A	Y	S	P	D	E	G	Y	L	S	L	K	F	T	R	T	I	E	P	Y	I	S	S	L	I	G	K	K	N	K	F	T	T	Q	L	L	T	A	S	L	R	L	S	S	Q	Y	S	S	S	L	Y	Q
Template Known Secondary structure						S	S									T								B	S								T	T	T	T								T	T	T	G	G	G	S	S			S		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.										.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.
Predicted Secondary structure													.																.	.	.	.	.	.	.	.	.																																					.	.
Query SS confidence													.																.	.	.	.	.	.	.	.	.																																					.	.
Query Sequence		S	L	C	Q	Y	R	K	P	D	G	S	.	G	I	V	S	L	K	I	D	W	I	I	E	R	Y	Q	.	.	.	.	.	.	.	.	.	L	P	Q	S	Y	Q	R	M	P	D	F	R	R	R	F	L	Q	V	C	V	N	E	I	N	S	R	T	P	M	R	L	S	Y	I	E	K	.	.	K	K	G	R	Q	T
Query Conservation													.																.	.	.	.	.	.	.	.	.																																					.	.
Alig confidence													.																.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation
Template Sequence		L	I	R	K	H	Y	S	N	F	K	K	K	N	Y	F	I	I	S	V	D	E	L	K	E	E	L	I	A	Y	T	F	D	K	D	G	N	I	E	Y	K	Y	P	D	F	P	I	F	K	R	D	V	L	N	K	A	I	A	E	I	K	K	K	T	E	I	S	F	V	G	F	T	V	H	E	K	E	G	R	K	I
Template Known Secondary structure						T				S	S	S																T						S	S	S	S				S	S		S								T												S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	I	V	F	S	F	R	D	I	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	L	K	F	E	F	V	V	D	E	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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