Return to main results Retrieve Phyre Job Id

Job DescriptionP03856
Confidence7.28%DateThu Jan 5 10:58:05 GMT 2012
Rank91Aligned Residues49
% Identity10%Templatec2k9mA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.
Predicted Secondary structure 


















Query SS confidence 




























































Query Sequence  LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAG
Query Conservation 

  
 


   
  
               
   

           
  

     
  
Alig confidence 

















........




















....









Template Conservation 
   
  

  

  

 ........ 


     


  
      ....

  
  

 
Template Sequence  LEGKEQELALELLNYLNE. . . . . . . . KGFLSKSVEEISDVLRCSVEE. . . . LEKVRQKVLR
Template Known Secondary structure 

STTSB
T........TSSBSS
TT

....T
Template Predicted Secondary structure 



........










....
Template SS confidence 




























































   85....90.........100.. .......110.........120... ......130...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions