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Job DescriptionP15082
Confidence98.22%DateThu Jan 5 11:34:40 GMT 2012
Rank24Aligned Residues162
% Identity21%Templatec3a11D_
PDB info PDB header:isomeraseChain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90......... 100.........110... ..... .120.... .....130........
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Query Sequence  DHKTLINTHKKELIAEAAVSFIHDGDSIILDA. GSTVLQMVPLLSRF. NNITV. MTNSLH. . . . . . IVNALSELDNEQTI
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Template Sequence  KEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIY
Template Known Secondary structure  TTT

TT

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TT




TTTTTT

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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   139140.........150.........160.........170.........180.........190.........200.........210.....
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Query Sequence  LMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKS. . .
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Template Sequence  VV. . . . . . . . . . . . . DSAARHYMKM. . TDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLG
Template Known Secondary structure 
.............GGGTTTTGGG..
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TT

TTTT


GGGB
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TT
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   182. ......190... ......200.........210.........220.........230.........240......
 
   216...220.........230... ......240....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PNVVCSLESVDKLITDAG. . IDPAFRQALEE
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Template Sequence  QLVEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILRE
Template Known Secondary structure  TT

B

GGGTS
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BS
GGG
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GGG
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   247..250.........260.........270.........280.........290.........300......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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