Job Description P15082 Confidence 98.22% Date Thu Jan 5 11:34:40 GMT 2012 Rank 25 Aligned Residues 209 % Identity 14% Template c2w48D_ PDB info PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																					.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	R	Q	A	A	I	L	E	Y	L	Q	K	Q	G	K	C	S	V	E	E	L	A	Q	Y	F	D	T	T	G	T	T	I	R	K	D	L	V	I	L	E	H	A	G	T	V	I	R	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	V	V	L	N	K	E	E	S
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	R	L	I	V	K	I	A	Q	L	Y	Y	E	Q	D	M	T	Q	A	Q	I	A	R	E	L	G	I	Y	R	T	T	I	S	R	L	L	K	R	G	R	E	Q	G	I	V	T	I	A	I	N	Y	D	Y	N	E	N	L	W	L	E	Q	Q	L	K	Q	K	F	G	L	K	E	A	V	V	A	S	S	D	G
Template Known Secondary structure		T														S												T			S													T	T	S	S						T	T																T		S								S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		D	P	P	I	D	H	K	T	L	I	N	T	H	K	K	E	L	I	A	E	A	A	V	S	F	I	.	.	.	.	H	D	G	D	S	I	I	L	D	A	G	S	T	V	L	Q	M	V	P	L	L	S	R	F	N	N	I	T	V	M	T	N	S	L	H	I	V	N	A	L	S	E	L	D	N	E	Q	T	I	L
Query Conservation																												.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																			.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	L	L	E	E	E	Q	L	S	A	M	G	Q	H	G	A	L	L	V	D	R	L	L	E	P	G	D	I	I	G	F	S	W	G	R	A	V	R	S	L	V	E	N	L	P	Q	R	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	Q	V	I	C	V	P
Template Known Secondary structure		.	.	.	.	.	.	.	.																								T	T								S									T					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																	.	.	.	.	.	.	140	.
		140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure															.																																			.
Query SS confidence															.																																			.
Query Sequence		M	P	G	G	T	F	R	K	K	S	A	S	F	.	H	G	Q	L	A	E	N	A	F	E	H	F	T	F	D	K	L	F	M	G	T	D	G	I	D	L	N	A	G	V	T	T	F	N	.	E	V	Y	T	V	S	K	A	M	C	N	A	A	R	E	V	I	L	M	A	D	S	S	K	F	G	R	K	S	P	N
Query Conservation															.																																			.
Alig confidence															.																																			.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	G	G	P	S	G	K	L	E	S	R	Y	H	V	N	T	L	T	Y	G	A	A	A	R	L	K	A	E	S	H	L	A	D	F	P	A	L	L	D	N	P	L	I	R	N	G	I	M	Q	S	Q	H	F	K	T	I	S	S	Y	W	D	S	L	D	V	A	L	.	.	.	.	.	.	.	.	.	.	.	V
Template Known Secondary structure		S	B		B		T	T	S	S		G	G	G														T								S	B	S	B		S										T	S											T	T						.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.												210
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	C	S	L	E	S	V	D	K	L	I	T	D	A	G	I	D	P	A	F	R	Q	A	L	E	E	K	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	G	S	P	A	I	R	D	G	A	N	W	H	A	F	Y	G	S	E	E	S	D	D	L	N	A	R	H	V
Template Known Secondary structure				B		T	T			S	S	S						T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions