Return to main results Retrieve Phyre Job Id

Job DescriptionP15082
Confidence91.12%DateThu Jan 5 11:34:40 GMT 2012
Rank272Aligned Residues105
% Identity12%Templatec1iz1B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40...... ...50.........60..... ....70.........80..
Predicted Secondary structure 






...








.
Query SS confidence 







































. . .


















.
















Query Sequence  QAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHA. . . GTVIRTYGGVVLNKEESDP. PIDHKTLINTHKKELIA
Query Conservation     

  
     
 
 


    

  





  

  ...
 
 
  


         .    
       
  

Alig confidence 







































...


















.
















Template Conservation 
  
  
  
   

 
 

  
 


 


  
  

  

  

 
   
  

  
  
   
              
Template Sequence  FRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRS
Template Known Secondary structure 
STS
TS


SSS
Template Predicted Secondary structure 
















Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   83......90.........100.........110.
Predicted Secondary structure 






Query SS confidence 




























Query Sequence  EAAVSFIHDGDSIILDAGSTVLQMVPLLS
Query Conservation    
   
  
  



 


   

  
 
Alig confidence 




























Template Conservation                               
Template Sequence  RAAARGDVGELSVAYFGTPIYRSLPLLLR
Template Known Secondary structure  TSS
SGGGGT
Template Predicted Secondary structure 


















Template SS confidence 




























   83......90.........100.........110.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions