Job Description P0A8Y5 Confidence 99.48% Date Thu Jan 5 11:08:59 GMT 2012 Rank 68 Aligned Residues 212 % Identity 15% Template c2b8eB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																										.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	K	L	I	A	I	D	M	D	G	T	L	L	L	P	D	H	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	A	V	K	N	A	I	A	A	A	R	A	R	G	V	N	V	V	L	T	T	G	R	P	Y	A	G	V	H	N	Y	L	K	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	T	A	V	I	F	D	K	T	G	T	L	T	K	G	K	P	E	V	T	D	L	V	P	L	N	G	D	E	R	E	L	L	R	L	A	A	I	A	E	R	R	S	E	H	P	I	A	E	A	I	V	K	K	A	L	E	H	G	I	E	L	G	E	P	E	K	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T					B		S										S	S	S														T	T			S													T	T							S	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	M	E	Q	P	G	D	Y	C	I	T	Y	N	G	A	L	V	Q	K	A	A	D	G	S	T	V	A	Q	T	A	L	S	Y	D	D	Y	R	F	L	E	K	L	S	R	E	V	G	S	H	F	H	A	L	D	R	T	T	L	Y	T	A	N	R	D	I	S	Y	Y	T	V	H	E	S	F	V	A	T	I	P
Query Conservation
Alig confidence		.	.	.	.																																																												.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																												.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	V	E	V	I	A	G	E	G	V	V	A	D	G	I	L	V	G	N	K	R	L	X	E	D	F	G	V	A	V	S	N	E	V	E	L	A	L	E	K	L	E	R	E	A	K	T	A	V	I	V	A	R	N	G	R	V	E	G	I	.	.	.	.	.	.	.	.	.	I	A	V	S	D	T	L	K
Template Known Secondary structure		.	.	.	.					T	T	T					T	T												T	T																	T	T									T	T						.	.	.	.	.	.	.	.	.							B
Template Predicted Secondary structure		.	.	.	.																																																												.	.	.	.	.	.	.	.	.
Template SS confidence
						485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.										.	.	.	.	.	.	550	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	F	C	E	A	E	K	M	D	P	N	T	Q	F	L	K	V	M	M	I	D	E	P	A	I	L	D	Q	A	I	A	R	I	P	Q	E	V	K	E	K	Y	T	V	L	K	S	A	P	Y	F	L	E	I	L	D	K	R	V	N	K	G	T	G	V	K	S	L	A	D	V	L	G	I	K	P	E	E	I	M
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		E	S	A	K	P	A	V	Q	E	L	K	R	X	G	I	K	V	G	X	I	T	G	D	N	W	R	S	A	E	A	I	S	R	E	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	L	V	I	A	E	V	L	P	H	Q	K	S	E	E	V	K	K	L	Q	.	A	K	E	V	V	A
Template Known Secondary structure		T	T											T	T								S	S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S					S			T	T										T	.	T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.																	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	D	Q	E	N	D	I	A	M	I	E	Y	A	G	V	G	V	A	M	D	N	A	I	P	S	V	K	E	V	A	N	F	V	T	K	S	N	L	E	D	G	V	A	F	A	I	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	G	D	G	I	N	D	A	P	A	L	A	Q	A	D	L	G	I	A	V	.	.	.	.	.	.	.	.	.	.	G	D	I	V	L	I	R	D	D	L	R	D	V	V	A	A	I	Q
Template Known Secondary structure						S	S	T	T							S	S						.	.	.	.	.	.	.	.	.	.						S	S			T								T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.											.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions