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Job DescriptionP29018
Confidence100.00%DateThu Jan 5 11:45:34 GMT 2012
Rank16Aligned Residues228
% Identity26%Templatec3gd7C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   344.....350.........360 .........370.........380.........390.........400.........410.........420..
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Query Sequence  STDPVTIEAEELFITSP. EGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWR
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Template Sequence  WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR
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   1204.....1210.........1220.........1230.........1240.........1250.........1260.........1270.........1280...
 
   423......430.........440.........450.........460.........470.........480.........490.........500..
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Query Sequence  KHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLN
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Template Sequence  KAFGVIPQKVFIFSGTFRKNLDP. NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS
Template Known Secondary structure  GGS





SSB
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TTTGGGSTTGGG
B

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   1284.....1290.........1300...... ...1310.........1320.........1330.........1340.........1350.........1360..
 
   503......510.........520.........530.........540....... ..550.........560.........570...
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Query Sequence  PCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDL. ADWDVIWVMQDGRIIEQGRYAELSVA
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Template Sequence  KAKILLLDEPSAHLDPVTYQIIRRTLKQ. AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY
Template Known Secondary structure  T

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   1363......1370.........1380.........1390 .........1400.........1410.........1420.........1430...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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