Job Description P29018 Confidence 93.07% Date Thu Jan 5 11:45:34 GMT 2012 Rank 400 Aligned Residues 125 % Identity 18% Template c2wv9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus Resolution 2.75 Å

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		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.			.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		T	L	P	A	G	Q	R	A	V	L	V	G	R	S	G	S	G	K	S	S	.	.	L	L	N	A	L	S	G	F	L	S	Y	Q	G	S	L	R	I	N	G	I	E	L	R	D	L	S	P	E	S	W	R	K	H	L	S	W	V	G	Q	N	P	Q	L	P	A	A	T	L	R	D	N	V	L	L	A	R	P	D
Query Conservation																						.	.
Alig confidence																						.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	K	K	R	Q	L	T	V	L	D	L	H	P	G	A	G	K	T	R	R	I	L	P	Q	I	I	K	D	A	I	Q	K	R	L	R	T	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	S	T	T									T	T	T	T	T	T	T	T												T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.																			.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.					.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		A	S	E	Q	E	L	Q	A	A	L	D	N	A	W	V	S	E	F	L	P	L	L	P	Q	G	V	D	T	P	V	G	D	Q	A	A	R	.	.	.	.	L	S	V	G	Q	A	Q	R	V	A	V	A	R	A	L	L	N	P	C	S	L	L	L	L	D	E	P	A	A	S	L	D	A	H	S	E	Q	R	V	M
Query Conservation																																						.	.	.	.
Alig confidence		.														.	.	.	.	.	.																	.	.	.	.
Template Conservation		.														.	.	.	.	.	.
Template Sequence		.	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	.	G	L	P	V	R	Y	L	T	P	R	E	H	S	G	N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	L	R	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y
Template Known Secondary structure		.	S											T	T	.	.	.	.	.	.	T	S												S																		S	S	S						S						S	T	T
Template Predicted Secondary structure		.														.	.	.	.	.	.
Template SS confidence
			225	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	N	A	A	S	L	R	Q	T	T	L	M	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	T	R	V	E	A	G	E	A	A	A	I	F	M	T
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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