Job Description P29018 Confidence 93.21% Date Thu Jan 5 11:45:34 GMT 2012 Rank 395 Aligned Residues 129 % Identity 12% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	L	N	F	T	L	P	A	G	Q	R	A	V	L	V	G	R	S	G	S	G	K	S	S	L	L	N	A	L	S	G	F	L	S	Y	Q	G	S	L	R	I	N	G	I	E	L	R	D	L	S	P	E	S	W	R	K	H	L	S	W	V	G	Q	N	P	Q	L	P	A	A	T	L	R	D	N	V	L	L	A
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S	S										S	S	S	S	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.																			.	.	.	.	130	.	.	.	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		R	P	D	A	S	E	Q	E	L	Q	A	A	L	D	N	A	W	V	S	E	F	L	P	L	L	P	Q	G	V	D	T	P	V	G	D	Q	A	A	R	L	S	V	G	Q	A	Q	R	V	A	V	A	R	A	L	L	N	P	C	S	L	L	L	L	D	E	P	A	.	A	S	L	D	A	H	S	E	Q	R	V	M
Query Conservation																																																																					.
Alig confidence		.																																	.	.	.	.	.	.	.	.	.	.	.	.									.	.													.
Template Conservation		.																																	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		.	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	.	.	.	.	.	.	.	.	.	.	.	.	V	K	E	G	M	E	K	F	.	.	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K
Template Known Secondary structure		.		T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.							T	T	.	.	S	S		S									S		S	S
Template Predicted Secondary structure		.																																	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.													.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	N	A	A	S	L	R	Q	T	T	L	M	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D
Template Known Secondary structure			T	T	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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