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Job DescriptionP29018
Confidence100.00%DateThu Jan 5 11:45:34 GMT 2012
Rank18Aligned Residues225
% Identity29%Templatec2olkD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:amino acid abc transporter; PDBTitle: abc protein artp in complex with adp-beta-s
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   350.........360.........370.........380.........390.........400.. .......410.... .....420......
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Query Sequence  IEAEELFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSY. QGSLRINGIELR. . DLSPESWRKHLS
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Template Sequence  IDVHQLKKSF. GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG
Template Known Secondary structure  S.SS

TT

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   2.......10. ........20.........30.........40.........50.........60.........70.........80
 
   427..430....... ..440.........450.........460.........470.........480.........490.........500.....
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Query Sequence  WVGQNPQLPAA. TLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCS
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Template Sequence  MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK. . AMELLDKV. . GLKDKAHAYPDSLSGGQAQRVAIARALAMEPK
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GGGTTS
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   81........90.........100.........110...... ...120.... .....130.........140.........150......
 
   506...510.........520.........530.. .......540........ .550.........560.........570.........
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Query Sequence  LLLLDEPAASLDAHSEQRVMEALNAAS. LRQTTLMVTHQLEDLA. DWDVIWVMQDGRIIEQGRYAELSVAGGPFAT
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Template Sequence  IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERT
Template Known Secondary structure  SSSTTS
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   157..160.........170.........180.........190.........200.........210.........220.........230..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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