Job Description P29018 Confidence 98.05% Date Thu Jan 5 11:45:34 GMT 2012 Rank 92 Aligned Residues 200 % Identity 17% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		L	A	L	I	L	A	P	E	F	F	Q	P	L	R	D	L	G	T	F	Y	H	A	K	A	Q	A	V	G	A	A	D	S	L	K	T	F	M	.	.	.	E	T	P	L	A	H	P	Q	R	G	E	A	E	L	A	S	T	D	P	V	T	I	E	A	E	E	L	F	I	T	S	P	E	G	K	T	L	A	G	P
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.																															.
Template Conservation																																																																								.
Template Sequence		S	L	K	D	C	M	R	R	L	F	Y	N	F	D	K	N	Y	K	D	W	Q	S	A	V	E	C	I	A	V	L	D	V	L	L	C	L	A	N	Y	S	R	G	G	D	G	P	M	C	R	P	V	I	L	L	P	E	D	T	P	P	F	L	E	L	K	G	S	R	H	P	.	C	G	D	D	F	I	P	N	D
Template Known Secondary structure																T	T																								T	T		S	S	S			B							T	T	T	S		S											.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.		.	.	1100	.	.	.	.	.	.
		369	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure						.	.	.	.	.	.																																																							.
Query SS confidence						.	.	.	.	.	.																																																							.
Query Sequence		L	N	F	T	.	.	.	.	.	.	L	P	A	G	Q	R	A	V	L	V	G	R	S	G	S	G	K	S	S	L	L	N	A	L	S	G	F	L	S	Y	Q	G	S	L	R	I	N	G	I	E	L	R	D	L	S	P	E	S	W	R	K	H	L	S	.	W	V	G	Q	N	P	Q	L	P	A	A	T	L	R	D
Query Conservation						.	.	.	.	.	.																																																							.
Alig confidence						.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.											.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Sequence		I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	.	.	.	.	.
Template Known Secondary structure									S	T	T										B			T	T	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T			B	S	S	S						.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		1113	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.																					.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500			.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		N	V	L	L	A	R	P	D	A	S	E	Q	E	L	Q	A	A	L	D	N	A	W	V	S	E	F	L	P	L	L	P	Q	G	V	D	T	P	V	G	D	Q	A	A	R	L	S	V	G	Q	A	Q	R	V	A	V	A	R	A	L	.	.	L	N	P	C	S	L	L	L	L	D	E	P	A	A	S	L	D	A	H
Query Conservation																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.															.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	D	R	V	F	T	R	L	G	.	.	.	.	.	.	S	T	F	F	V	E	L	S	E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L	G	R	G	T	A	T	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	B							.	.	.	.	.	.																			T	T								S		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template SS confidence
																															1169	1170	.	.	.	.	.	.	.	.							.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.			.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure															.	.		.
Query SS confidence															.	.		.
Query Sequence		S	E	Q	R	V	M	E	A	L	N	A	A	S	.	.	L	.	R	Q	T	T	L	M	V	T	H	Q	L	E	D	L	A	D	W	D	V
Query Conservation															.	.		.
Alig confidence															.	.		.
Template Conservation
Template Sequence		D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q
Template Known Secondary structure																	T	S																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1223	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions