Job Description P29018 Confidence 96.09% Date Thu Jan 5 11:45:34 GMT 2012 Rank 157 Aligned Residues 123 % Identity 26% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	G	Q	R	A	V	L	V	G	R	S	G	S	G	K	S	S	L	L	N	A	L	S	G	F	L	S	Y	Q	G	S	L	R	I	N	G	I	E	L	R	D	L	S	P	E	S	W	R	K	H	L	S	W	V	G	Q	N	P	Q	L	P	A	A	T	L	R	D	N	V	L	L	A	R	P	D	A	S	E	Q
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	L	V	A	A	D	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S									T	T	S	S															T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																			.	130	.	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		E	L	Q	A	A	L	D	N	A	W	V	S	E	F	L	P	L	L	P	Q	G	V	D	T	P	V	G	D	Q	A	A	R	L	S	V	G	Q	A	Q	R	V	A	V	A	R	A	L	L	N	P	C	S	L	L	L	L	D	E	P	A	.	A	S	L	D	A	H	S	E	Q	R	V	M	E	A	L	N	A	A	S
Query Conservation																																																														.
Alig confidence		.	.	.	.	.	.	.																																																						.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G
Template Known Secondary structure		.	.	.	.	.	.	.																T								T	T																		T		S										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		533	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	T	T	L	M	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	E	V	L	L	V	L	D
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions