Job Description P29018 Confidence 100.00% Date Thu Jan 5 11:45:34 GMT 2012 Rank 1 Aligned Residues 569 % Identity 22% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		L	T	R	W	L	K	Q	Q	S	V	I	S	Q	R	W	L	N	I	S	R	L	L	G	F	V	S	G	I	L	I	I	A	Q	A	W	F	M	A	R	I	L	Q	H	M	I	M	E	N	I	P	R	E	A	.	.	.	.	.	.	L	L	L	P	F	T	L	L	V	L	T	F	V	L	R	A	W	V	V	W	L
Query Conservation																																																							.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	K	R	Y	L	Q	F	V	K	P	Y	K	Y	R	I	F	A	T	I	I	V	G	I	I	K	F	G	I	P	M	L	I	P	L	L	I	K	Y	A	I	D	G	V	I	N	N	H	A	L	T	T	D	E	K	V	H	H	L	T	I	A	I	G	I	A	L	F	I	F	V	I	V	R	P	P	I	E	F	I
Template Known Secondary structure											G	G	G													T	T	T																	T	T	T	T		S	S		T	T	T					T	T	T												T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	R	V	G	Y	H	A	G	Q	H	I	R	F	A	I	R	R	Q	V	L	D	R	L	Q	Q	A	G	P	A	W	I	Q	G	K	P	A	G	S	W	A	T	L	V	L	E	Q	I	D	D	M	H	D	Y	Y	A	R	Y	L	P	Q	M	A	L	A	V	S	V	P	L	L	I	V	V	A	I	F	P	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	Y	L	A	Q	W	T	S	N	K	I	L	Y	D	I	R	K	K	L	Y	N	H	L	Q	A	L	S	A	R	F	Y	A	N	N	Q	V	G	Q	V	I	S	R	V	I	N	D	V	E	Q	T	K	D	F	I	L	T	G	L	M	N	I	W	L	D	C	I	T	I	I	I	A	L	S	I	M	F	F	L	D
Template Known Secondary structure																												S							T	S																T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	A	A	L	I	L	L	G	T	A	P	L	I	P	L	F	M	A	L	V	G	M	G	A	A	D	A	N	R	R	N	F	L	A	L	A	R	L	S	G	H	F	L	D	R	L	R	G	M	E	T	L	R	I	F	G	R	G	E	A	E	I	E	S	I	R	S	A	S	E	D	F	R	Q	R	T	M	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	L	T	L	A	A	L	F	I	F	P	F	Y	I	L	T	V	Y	V	F	F	G	R	L	R	K	L	T	R	E	R	S	Q	A	L	A	E	V	Q	G	F	L	H	E	R	V	Q	G	I	S	V	V	K	S	F	A	I	E	D	N	E	A	K	N	F	D	K	K	N	T	N	F	L	T	R	A	L	K	H
Template Known Secondary structure										T																																															T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	A	F	L	S	S	G	I	L	E	F	F	T	S	L	S	I	A	L	V	A	V	Y	F	G	F	S	Y	L	G	E	L	D	F	G	H	Y	D	T	G	V	T	L	A	A	G	F	L	A	L	I	L	A	P	E	F	F	Q	P	L	R	D	L	G	T	F	Y	H	A	K	A	Q	A	V	G	A	A	D
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		T	R	W	N	A	Y	S	F	A	A	I	N	T	V	T	D	I	G	P	I	I	V	I	G	V	G	A	Y	L	A	.	.	.	.	.	.	.	.	I	S	G	S	I	T	V	G	T	L	A	A	F	V	G	Y	L	E	L	L	F	G	P	L	R	R	L	V	A	S	F	T	T	L	T	Q	S	F	A	S	M	D
Template Known Secondary structure																																.	.	.	.	.	.	.	.	T	T	T	S	S		T	T													T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270									.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		S	L	K	T	F	M	E	T	P	L	A	H	P	Q	R	G	E	A	E	L	A	S	T	D	P	V	T	I	E	A	E	E	L	F	I	T	S	P	E	G	.	K	T	L	A	G	P	L	N	F	T	L	P	A	G	Q	R	A	V	L	V	G	R	S	G	S	G	K	S	S	L	L	N	A	L	S	G	F	L	S
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		R	V	F	Q	L	I	D	E	D	Y	D	I	K	N	G	V	G	A	Q	P	I	E	I	K	Q	G	R	I	D	I	D	H	V	S	F	Q	Y	N	D	N	E	A	P	I	L	K	D	I	N	L	S	I	E	K	G	E	T	V	A	F	V	G	M	S	G	G	G	K	S	T	L	I	N	L	I	P	R	F	Y	D
Template Known Secondary structure								T				S	S				T	T								S												S		S	S	S			S										T	T								S	T	T	S	S						T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		402	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		Y	Q	.	G	S	L	R	I	N	G	I	E	L	R	D	L	S	P	E	S	W	R	K	H	L	S	W	V	G	Q	N	P	Q	L	P	A	A	T	L	R	D	N	V	L	L	A	R	P	D	A	S	E	Q	E	L	Q	A	A	L	D	N	A	W	V	S	E	F	L	P	L	L	P	Q	G	V	D	T	P	V	G
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		V	T	S	G	Q	I	L	I	D	G	H	N	I	K	D	F	L	T	G	S	L	R	N	Q	I	G	L	V	Q	Q	D	N	I	L	F	S	D	T	V	K	E	N	I	L	L	G	R	P	T	A	T	D	E	E	V	V	E	A	A	K	M	A	N	A	H	D	F	I	M	N	L	P	Q	G	Y	D	T	E	V	G
Template Known Secondary structure			S							T	T			G	G	G	S								T						S	S					S	S	B						G	G	G		S	S													T	T							T	S	T	T	G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	A	R	L	S	V	G	Q	A	Q	R	V	A	V	A	R	A	L	L	N	P	C	S	L	L	L	L	D	E	P	A	A	S	L	D	A	H	S	E	Q	R	V	M	E	A	L	N	A	A	S	L	R	Q	T	T	L	M	V	T	H	Q	L	E	D	L	A	D	W	D	V	I	W	V	M	Q	D	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	G	V	K	L	S	G	G	Q	K	Q	R	L	S	I	A	R	I	F	L	N	N	P	P	I	L	I	L	D	E	A	T	S	A	L	D	L	E	S	E	S	I	I	Q	E	A	L	D	V	L	S	K	D	R	T	T	L	I	V	A	H	R	L	S	T	I	T	H	A	D	K	I	V	V	I	E	N	G	H
Template Known Secondary structure		G	G	G	T	T	S																			S						S	T	T	T	T																	T	T	T	S							S	S	G	G	G	T	T	T		S							T	T
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	Q	G	R	Y	A	E	L	S	V	A	G	G	P	F	A	T	L	L	A	H	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	E	T	G	T	H	R	E	L	I	A	K	Q	G	A	Y	E	H	L	Y	S	I	Q	N
Template Known Secondary structure														T	T	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.