Job Description P29018 Confidence 100.00% Date Thu Jan 5 11:45:34 GMT 2012 Rank 43 Aligned Residues 222 % Identity 26% Template c2d62A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein Resolution 2.10 Å

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		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																																												.																			.	.	.
Query SS confidence																																																												.																			.	.	.
Query Sequence		D	P	V	T	I	E	A	E	E	L	F	I	T	S	P	E	G	K	T	L	A	G	P	L	N	F	T	L	P	A	G	Q	R	A	V	L	V	G	R	S	G	S	G	K	S	S	L	L	N	A	L	S	G	F	L	S	Y	Q	.	G	S	L	R	I	N	G	I	E	L	R	D	L	S	P	E	S	W	.	.	.
Query Conservation																																																												.																			.	.	.
Alig confidence																	.																																											.																			.	.	.
Template Conservation																	.
Template Sequence		G	X	A	E	V	K	L	I	N	I	W	K	R	F	G	.	D	V	T	A	V	K	D	L	S	L	E	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	X	I	A	G	L	E	E	P	T	R	G	Q	I	Y	I	E	D	N	L	V	A	D	P	E	K	G	V	F	V	P	P
Template Known Secondary structure		S			S											T	.	T													T	T								S	T	T	S	S										T	S	S			S							T	T						G	G	G	T
Template Predicted Secondary structure																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			422	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.															.
Query SS confidence		.															.
Query Sequence		.	R	K	H	L	S	W	V	G	Q	N	P	Q	L	P	.	A	A	T	L	R	D	N	V	L	L	A	R	P	D	A	S	E	Q	E	L	Q	A	A	L	D	N	A	W	V	S	E	F	L	P	L	L	P	Q	G	V	D	T	P	V	G	D	Q	A	A	R	L	S	V	G	Q	A	Q	R	V	A	V	A	R	A
Query Conservation		.															.
Alig confidence		.															.																																		.	.	.	.	.
Template Conservation																																																			.	.	.	.	.
Template Sequence		K	E	R	D	V	A	X	V	F	Q	S	Y	A	L	Y	P	H	X	T	V	Y	D	N	I	A	F	P	L	K	L	R	K	V	P	K	Q	E	I	D	K	R	V	R	E	V	A	E	X	L	.	.	.	.	.	G	L	T	E	L	L	N	R	K	P	R	E	L	S	G	G	Q	R	Q	R	V	A	L	G	R	A
Template Known Secondary structure					T							S					T	T	S												T	T	T																	T	.	.	.	.	.	T		G	G	G	T	T			G	G	G	S
Template Predicted Secondary structure																																																			.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.	.	.	.	.	.	.	.		.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure																																				.	.																.
Query SS confidence																																				.	.																.
Query Sequence		L	L	N	P	C	S	L	L	L	L	D	E	P	A	A	S	L	D	A	H	S	E	Q	R	V	M	E	A	L	N	A	A	S	L	.	.	R	Q	T	T	L	M	V	T	H	Q	L	E	D	L	A	.	D	W	D	V	I	W	V	M	Q	D	G	R	I	I	E	Q	G	R	Y	A	E	L	S	V	A
Query Conservation																																				.	.																.
Alig confidence																																				.	.																.
Template Conservation
Template Sequence		I	I	R	R	P	K	V	F	L	X	D	E	P	L	S	N	L	D	A	K	L	R	V	K	X	R	A	E	L	K	K	L	Q	R	Q	L	G	V	T	T	I	Y	V	T	H	D	Q	V	E	A	X	T	X	G	D	R	I	A	V	X	N	K	G	E	L	Q	Q	V	G	T	P	D	E	V	Y	Y	K
Template Known Secondary structure			S	S			S						S	T	T	T	T																					T								S										S							T	T														S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions