Job Description P75995 Confidence 100.00% Date Wed Jan 25 15:21:04 GMT 2012 Rank 1 Aligned Residues 416 % Identity 18% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	A	N	N	I	N	H	I	L	E	E	A	S	Q	A	T	Q	T	A	V	N	I	A	G	K	E	C	N	L	E	E	Q	Y	Q	L	G	T	E	A	A	L	K	P	H	L	R	T	I	I	I	L	K	Q	G	I	V	W	C	T	S	L	P	G	N	R	V	L	L	S	R	I	P	V	F	P	D	S	N	L
Query Conservation
Alig confidence																					.																											.	.	.	.	.	.
Template Conservation																					.																											.	.	.	.	.	.
Template Sequence		A	L	F	Q	E	Q	A	E	R	S	E	K	L	R	T	E	S	Y	Q	.	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	P	E	Q	A	.	.	.	.	.	.	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T	D	E	L
Template Known Secondary structure								T	T											B	.		T	T	T	S	S														T	T		T	T	T		.	.	.	.	.	.											S
Template Predicted Secondary structure																					.																											.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.							.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		L	L	A	P	A	I	D	T	V	N	R	L	.	.	.	.	P	I	L	L	Y	Q	N	Q	F	A	D	T	R	I	L	V	T	I	S	D	Q	H	I	R	G	A	L	N	V	P	L	K	G	V	R	Y	V	L	R	V	A	D	D	I	I	G	P	T	G	D	V	M	T	L	N	G	H	Y	P	Y	T	E	K	V
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																													.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		L	K	A	V	G	E	Q	L	S	R	E	C	A	K	Y	P	E	T	Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	.	.	.	.	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A
Template Known Secondary structure														S	S		S	T	T	T	T							T	T								T									.	.	.	.										T						T	S		S		T	T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	T	K	Y	H	F	T	I	I	F	N	P	P	P	L	F	S	F	Y	R	L	I	D	K	G	F	G	I	L	I	F	I	L	L	I	A	C	A	A	A	F	L	L	D	R	Y	F	N	K	S	A	T	P	E	E	I	L	R	R	A	I	N	N	G	E	I	V	P	F	Y	Q	P	V	V	N	G	R	E	G
Query Conservation
Alig confidence				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	G	.	D	S	P	Q	A	V	L	S	L	G	D	Q	A	L	A	Q	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T
Template Known Secondary structure		T	T	.																			S		S	S		S								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T												S	S		T
Template Predicted Secondary structure				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		369	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.																.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		276		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	L	R	G	V	E	V	L	A	R	W	K	Q	P	H	G	G	Y	I	S	P	A	A	F	I	P	L	A	E	K	S	G	L	I	V	P	L	T	Q	S	L	M	N	Q	V	A	R	Q	M	N	A	I	A	S	K	L	P	E	G	F	H	I	G	I	N	F	S	A	S	H	I	I	S	P	T	F	V	D	E
Query Conservation			.
Alig confidence			.																																																			.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	.	.	.	.	.	.	H	E	E	S	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K
Template Known Secondary structure		T														T	T	S														T	T	T																	G	G	G	.	.	.	.	.	.																S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.							.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	N	F	R	D	S	F	T	R	R	D	L	N	L	V	L	E	V	T	E	R	E	P	L	N	V	D	E	S	L	V	Q	R	L	N	I	L	H	E	N	G	F	V	I	A	L	D	D	F	G	T	G	Y	S	G	L	S	Y	L	H	D	L	H	I	D	Y	I	K	I	D	H	S	F	V	G	R	V	N	A
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G	E	E	.	Q	L	P	E	Q	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q
Template Known Secondary structure									T	G	G	G	T	T	T							G	G	.	G																	T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.		.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	E	S	T	R	I	L	D	C	V	L	D	L	A	R	K	L	S	I	S	I	V	A	E	G	V	E	T	K	E	Q	L	D	Y	L	N	Q	N	Y	I	T	F	Q	Q	G	Y	Y	F	Y	K	P	V	T	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P	W
Template Known Secondary structure																		T	T	T										S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.