 |
Job Description | P75995 | Confidence | 22.99% | Date | Wed Jan 25 15:21:04 GMT 2012 |
Rank | 376 | Aligned Residues | 129 |
% Identity | 11% | Template | c3n4eA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal |
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222
|
Resolution | 2.40 Å |
|
 |
  |   |
317 | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | Q | V | A | R | Q | M | N | A | I | A | S | K | L | P | E | G | F | H | I | G | I | N | F | S | A | S | H | I | I | S | P | T | F | V | D | E | C | L | N | F | R | D | S | F | T | R | R | D | L | N | L | V | L | E | V | T | E | R | E | P | L | N | V | D | E | S | L | V | Q | R | L | N | I | L | H | E | N | G |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   | . | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   | . | . | . | . | . | . |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . |   |
Template Sequence |   |
I | P | G | D | I | A | K | A | R | A | V | R | E | L | L | G | P | D | A | V | I | G | F | D | A | N | N | G | Y | . |
. |
S | V | G | G | A | I | R | V | G | R | A | L | E | D | L | G | Y | S | W | . |
. |
. |
. |
. |
. |
F | E | E | P | V | Q | H | Y | H | V | G | A | X | G | E | V | A | Q | R | L | . |
. |
. |
D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |
| T | T |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  | . | . | . | . | . | . |  |  |
|
| S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . | . | . |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | |
|
|
. |
  |
  |   |
397 | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | V | I | A | L | D | D | F | G | T | G | Y | S | G | L | S | Y | L | H | D | L | H | I | D | Y | I | K | I | D | H | S | F | V | G | R | V | N | A | D | P | E | S | T | R | I | L | D | C | V | L | D | L | A | R | K | L | S | I | S | I | V | A | E | G | V | E | T |
Query Conservation |   |
  |   |
|
|
|
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   | . | . | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |
Template Sequence |   |
I | T | V | S | A | G | E | Q | T | Y | T | L | Q | A | L | K | D | L | I | L | S | G | V | R | X | V | Q | P | D | I | V | K | X | G | G | I | T | G | . |
. |
. |
. |
. |
. |
. |
X | X | Q | C | A | A | L | A | H | A | H | G | V | E | F | V | P | H | Q | T | Q | P |
Template Known Secondary structure |   |
S |  |  |  | B |
| T | T |
|
| S |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |
|
|
| T | T | T | T | T |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |
|
|
|
|
|
| S |
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
243 | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|