 |
Job Description | P75995 | Confidence | 35.68% | Date | Wed Jan 25 15:21:04 GMT 2012 |
Rank | 308 | Aligned Residues | 133 |
% Identity | 9% | Template | c3eegB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:2-isopropylmalate synthase; |
PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii
|
Resolution | 2.78 Å |
|
 |
  |   |
317 | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
M | N | Q | V | A | R | Q | M | N | A | I | A | S | K | L | P | E | G | F | H | I | G | I | N | F | S | A | S | H | I | I | S | P | T | F | V | D | E | C | L | N | F | R | D | S | F | T | R | R | D | L | N | L | V | L | E | V | T | E | R | E | P | L | N | V | D | E | S | L | V | Q | R | L | N | I | L | H | E | N | . |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
| . | . | . | . |   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |
Template Sequence |   |
L | E | X | A | V | A | A | V | K | Q | A | K | K | V | V | H | E | . |
. |
. |
V | E | F | F | C | E | D | A | G | R | A | D | Q | A | F | L | A | R | X | V | E | A | V | I | E | A | G | A | D | . |
. |
. |
. |
V | V | N | I | P | D | T | T | G | Y | X | L | P | W | Q | Y | G | E | R | I | K | Y | L | X | D | N | V |
Template Known Secondary structure |   |
T |
|
|  |  |  |  |  |  |  |  |  |  |  | S | S |  | . | . | . |  |  |  |  |  |  | S | T | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S | . | . | . | . |  |  |  |  |  |
| S | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
|
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . |
  |
  |   |
|
|
|
|
396 | . | . | . | 400 | . | |
|
|
. | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . |
|
|  |  |  |  | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
. |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
G | F | V | I | A | L | . |
. |
. |
D | D | F | G | T | G | Y | S | G | L | S | Y | L | H | D | L | H | I | D | Y | I | K | I | D | H | S | F | V | G | R | V | N | A | D | P | E | S | T | R | I | L | D | C | V | L | D | L | A | R | K | L | S | I | S | I |
Query Conservation |   |
. | . | . | . |
|   |   |
|
|
| . | . | . |
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |   |
|
Alig confidence |   |
. | . | . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|   |   |
|   |
|
|   |   |
|
|
|   |
|
|   |
|   |
|   |   |
|
|
|   |   |
|
|   |
|
|   |
|
|
|   |   |   |
|
|   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
S | N | I | D | K | A | I | L | S | A | H | C | H | N | D | L | G | L | A | T | A | N | S | L | A | A | L | Q | N | G | A | R | Q | V | E | C | T | I | N | G | I | G | E | R | A | G | N | T | A | L | E | E | V | V | X | A | X | E | C | H | K | E | T | L | G | L | E | T |
Template Known Secondary structure |   |
T | T | G | G | G | S |  |  |  |  |  |
| B |
| S | S | S |
|  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  | B | G | G | G |
|
| S | T | T |
| B |
| B |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |
|  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
192 | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|