Job Description P75995 Confidence 100.00% Date Wed Jan 25 15:21:04 GMT 2012 Rank 7 Aligned Residues 228 % Identity 24% Template c2w27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium Resolution 2.80 Å

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		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	R	R	A	I	N	N	G	E	I	V	P	F	Y	Q	P	V	V	N	G	R	E	G	T	L	R	G	V	E	V	L	A	R	W	K	Q	P	H	G	G	Y	I	S	P	A	A	F	I	P	L	A	E	K	S	G	L	I	V	P	L	T	Q	S	L	M	N	Q	V	A	R	Q	M	N	A	I	A	S	K	L
Query Conservation
Alig confidence																																																																													.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		P	L	D	I	L	T	N	I	D	D	V	L	P	Y	Y	Q	A	I	F	S	A	E	E	Q	K	V	V	G	Y	E	V	L	G	R	I	L	A	D	S	E	I	Q	S	L	G	P	F	F	L	D	A	G	I	P	E	E	Y	K	L	E	V	D	N	R	I	I	R	Q	A	L	D	R	F	L	E	.	.	.	.	A
Template Known Secondary structure								T	G	G	G											T	T	T		S													S	S	S				S							T	T	S																					T	T	.	.	.	.	S
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		P	E	G	F	H	I	G	I	N	F	S	A	S	H	I	I	.	.	S	P	T	F	V	D	E	C	L	N	F	R	D	S	F	T	R	R	D	L	N	L	V	L	E	V	T	E	R	E	P	L	N	V	D	E	S	L	V	Q	R	L	N	I	L	H	E	N	G	F	V	I	A	L	D	D	F	G	T	G	Y	S
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		D	S	D	L	L	I	F	M	N	Q	D	A	N	L	L	M	L	D	H	G	E	S	F	L	E	L	L	K	E	Y	E	A	K	G	I	E	L	H	R	F	V	L	E	I	T	E	H	N	F	E	G	D	I	E	Q	L	Y	H	M	L	A	Y	Y	R	T	Y	G	I	K	I	A	V	D	N	I	G	K	E	S	S
Template Known Secondary structure			T	T													G	G	G	T	T														T			G	G	G							G	G	G			S														T	T	T									T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	Y	L	H	D	L	H	I	D	Y	I	K	I	D	H	S	F	V	G	R	V	N	A	D	P	E	S	T	R	I	L	D	C	V	L	D	L	A	R	K	L	S	I	S	I	V	A	E	G	V	E	T	K	E	Q	L	D	Y	L	N	Q	N	Y	I	T	F	Q	Q	G	Y	Y	F	Y	K	P	V	T
Query Conservation
Alig confidence																									.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		N	L	D	R	I	A	L	L	S	P	D	L	L	K	I	D	L	Q	A	L	S	P	S	.	.	.	.	.	Y	E	H	V	L	Y	S	I	S	L	L	A	R	K	I	G	A	A	L	L	Y	E	D	I	E	A	N	F	Q	L	Q	Y	A	W	R	N	G	G	R	Y	F	Q	G	Y	Y	L	V	S	P	S	E
Template Known Secondary structure												S							T	T					.	.	.	.	.																T										S										T	T						S	T	T	T				B	S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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