 |
Job Description | P75995 | Confidence | 28.69% | Date | Wed Jan 25 15:21:04 GMT 2012 |
Rank | 335 | Aligned Residues | 102 |
% Identity | 8% | Template | c2ftpA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; |
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
|
Resolution | 2.40 Å |
|
 |
  |   |
314 | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | S | L | M | N | Q | V | A | R | Q | M | N | A | I | A | S | K | L | P | E | G | F | H | I | G | I | N | F | S | A | S | H | . |
. |
. |
. |
. |
. |
I | I | S | P | T | F | V | D | E | C | L | N | F | R | D | S | F | T | R | R | D | L | N | L | V | L | E | V | T | E | R | E | P | L | N | V | D | E | S | L | V | Q |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   | . | . | . | . | . | . |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
| . | . | . | . |   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
K | D | S | L | E | R | F | V | P | V | L | E | A | A | R | Q | H | Q | V | R | . |
. |
. |
V | R | G | Y | I | S | C | V | L | G | C | P | Y | D | G | D | V | D | P | R | Q | V | A | W | V | A | R | E | L | Q | Q | M | G | C | Y | . |
. |
. |
. |
E | V | S | L | G | D | T | I | G | V | G | T | A | G | A | T | R | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  | . | . | . |  |  |  |  |  |  |
| T | T |
| B | T | T | T | B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | . | . | . | . |  |  |  |  |  |  | S | S | S |
|
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
|
|
|
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
  |
  |   |
388 | . | 390 | . | . | . | . | . | |
|
. | . | . | . | 400 | . | |
|
|
. | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | L | N | I | L | H | E | N | . |
. |
G | F | V | I | A | L | . |
. |
. |
D | D | F | G | T | G | Y | S | G | L | S | Y | L | H | D | L | H | I | D | Y | I |
Query Conservation |   |
  |   |   |   |
|   |   |   | . | . |
|   |   |
|
|
| . | . | . |
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|   |
|
|
|
|   |
|
|   |   |   |
|
Template Sequence |   |
L | I | E | A | V | A | S | E | V | P | R | E | R | L | A | G | H | F | H | D | T | Y | G | Q | A | L | A | N | I | Y | A | S | L | L | E | G | I | A | V | F |
Template Known Secondary structure |   |
 |  |  |  |  | T | T | T | S |
| G | G | G |  |  |  |  |  | B |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|