Job Description P75995 Confidence 25.19% Date Wed Jan 25 15:21:04 GMT 2012 Rank 357 Aligned Residues 173 % Identity 16% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		K	S	G	L	I	V	P	L	T	Q	S	L	M	N	Q	V	A	R	Q	M	N	A	I	A	S	K	L	P	E	G	F	H	I	G	I	N	F	S	A	S	H	I	I	S	P	T	F	V	D	E	C	L	N	F	R	D	S	F	T	R	R	D	L	N	L	V	L	E	V	T	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.
Template Sequence		R	Y	G	F	N	S	H	G	L	S	V	V	E	H	R	L	R	A	R	Q	Q	K	Q	A	K	L	T	E	D	G	L	P	L	G	V	N	L	G	K	N	K	T	S	V	D	A	A	E	D	Y	A	E	G	V	R	V	L	G	P	.	L	A	D	Y	L	V	V	N	V	S	S	P	N	T	A	G	L	R	S	L
Template Known Secondary structure							B												T	T										T	T											T	T		S														G	G	.	G		S									T	T	S	T	T	S	G	G	G
Template Predicted Secondary structure																																																													.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
				375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410							.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure		.	.																						.																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																						.																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	E	R	E	P	L	N	V	D	E	S	L	V	Q	R	L	N	I	L	H	E	N	.	G	F	V	I	A	L	D	D	F	G	T	G	Y	S	G	.	.	.	.	.	.	L	S	Y	L	H	D	L	H	I	D	Y	I	K	I	D	H	S	F	V	G	R	V	N	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																						.																.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																						.								.								.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		Q	G	K	A	E	L	R	R	L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	R	P	A	V	L	V	K	.	I	A	P	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G	L	Q	G	A	L	R	S	E	T	G	G
Template Known Secondary structure		G	S																	T	S		G	G	G								.			S																		T										B	S				T	T				T	T	T	T	S	S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
					435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.			.	.	.	.	.	.	460		.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																				.	.								.
Query SS confidence		.	.	.																				.	.								.
Query Sequence		.	.	.	D	P	E	S	T	R	I	L	D	C	V	L	D	L	A	R	K	L	S	.	.	I	S	I	V	A	E	G	.	V	E	T	K	E	Q	L	D	Y	L	N	Q	N	Y	I	T	F	Q	Q
Query Conservation		.	.	.																				.	.								.
Alig confidence		.	.	.																				.	.								.
Template Conservation
Template Sequence		L	S	G	K	P	L	R	D	L	S	T	Q	T	I	R	E	M	Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	A	S	L	V	Q
Template Known Secondary structure																						T	T	T		S						S	S			S											T		S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions