Job Description P77280 Confidence 100.00% Date Thu Jan 5 12:27:11 GMT 2012 Rank 47 Aligned Residues 309 % Identity 18% Template c3pi7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidoreductase; PDBTitle: crystal structure of a putative nadph:quinone reductase (mll3093) from2 mesorhizobium loti at 1.71 a resolution Resolution 1.71 Å

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		2	.	.	.	.	.	.																	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	S	K	A	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	P	G	T	M	K	I	I	S	A	E	I	P	V	P	K	E	D	E	V	L	I	K	V	E	Y	V	G	I	C	G	S	D	V	H	G	F	E	S	G	P	F	I	P	P	K	D	P	N	Q	E	I	G	L	G	H
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		S	E	X	K	A	L	L	L	V	G	D	G	Y	T	K	T	P	S	G	S	A	L	E	A	X	E	P	Y	L	E	Q	G	R	I	A	V	P	A	P	G	P	S	Q	V	L	I	K	V	N	L	A	S	I	N	P	S	D	V	A	F	I	K	G	.	.	.	Q	Y	G	Q	P	R	V	K	G	R	P	A	G	F
Template Known Secondary structure		S									S		B	S		S	S				S					S	T	T	T													T	T																				T	T	.	.	.		S	S	S		B		T	T	S	B			S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	C	A	G	T	V	V	A	V	G	S	R	V	R	K	F	K	P	G	D	R	V	N	I	E	P	G	V	P	C	G	H	C	R	Y	C	L	E	G	K	Y	N	I	C	P	D	V	D	F	M	A	T	Q	P	N	Y	R	G	A	L	T	H	Y	L	C	H	P	E	S	F	T	Y	K	L	P	D	N	M	D	T
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	V	G	T	I	V	A	G	G	D	E	P	Y	A	K	S	L	V	G	K	R	V	A	F	A	T	G	L	S	N	W	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	A	E	Y	A	V	A	E	A	A	A	C	I	P	L	L	D	T	V	R	D
Template Known Secondary structure												S	S							T	T								T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B	S						G	G	G						T	T	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																										.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		M	E	G	A	L	V	E	P	A	A	V	G	M	H	A	.	A	M	L	A	D	V	K	P	G	K	K	I	I	I	L	G	A	G	C	I	G	L	M	T	L	Q	A	C	K	C	L	G	A	T	E	I	A	V	V	D	V	L	E	K	R	L	A	M	A	E	Q	L	G	A	T	V	V	I	N	G	A	K	E	D
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		E	D	G	A	A	X	I	V	N	P	L	T	A	I	A	X	F	D	I	V	K	Q	E	G	E	K	A	F	V	X	T	A	G	A	S	Q	L	C	K	L	I	I	G	L	A	K	E	E	G	F	R	P	I	V	T	V	R	R	D	E	Q	I	A	L	L	K	D	I	G	A	A	H	V	L	N	E	K	A	P	D
Template Known Secondary structure					T	T	S	S																			S					S	S	T	T	S														T								S		G	G	G								T		S					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																																								.	.	.																	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.																	.	.	.	.	.	.	.
Query Sequence		T	I	A	R	C	Q	Q	F	T	E	D	M	G	A	D	I	V	F	E	T	A	G	S	A	V	T	V	K	Q	A	P	Y	L	V	M	R	G	G	K	I	M	I	V	G	T	V	P	G	D	S	A	I	N	F	.	.	.	L	K	I	N	R	E	V	T	I	Q	T	V	F	R	Y	A	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.																	.	.	.	.	.	.	.
Alig confidence																												.																												.	.	.																	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		F	E	A	T	L	R	E	V	X	K	A	E	Q	P	R	I	F	L	D	A	V	T	G	P	L	A	.	S	A	I	F	N	A	X	P	K	R	A	R	W	I	I	Y	G	R	L	D	P	D	A	T	V	I	R	E	P	G	Q	L	I	F	Q	H	K	H	I	E	G	F	W	L	S	E	W	X	R	Q	F	K	E
Template Known Secondary structure																					S	S						.							S		T	T									S			S					S		T						S																T
Template Predicted Secondary structure																												.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
					295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	N	R	Y	P	V	T	I	E	A	I	S	S	G	R	F	D	V	K	S	M	V	T	H	I	Y	D	Y	R	D	V	Q	Q	A	F	E	E	S	V	N	N	K	R	D	I	I	K	G	V	I	K
Query Conservation		.	.	.
Alig confidence		.	.	.																		.	.	.															.									.
Template Conservation																						.	.	.															.									.
Template Sequence		R	R	G	P	A	I	L	E	A	Q	K	R	F	S	D	G	R	W	S	T	.	.	.	V	T	A	V	V	P	L	A	E	A	I	A	W	V	.	P	A	E	L	T	K	P	N	.	G	K	V	F	I	R
Template Known Secondary structure																T	S	S				.	.	.															.					T	S	S	S	.	S
Template Predicted Secondary structure																						.	.	.															.									.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions