Phyre 2 alignment of P77280 with c2j3iB

Job Description P77280
Confidence 100.00% Date Thu Jan 5 12:27:11 GMT 2012

Rank 46 Aligned Residues 313

% Identity 12% Template c2j3iB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent oxidoreductase p1; PDBTitle: crystal structure of arabidopsis thaliana double bond2 reductase (at5g16970)-binary complex

Resolution 2.8 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10								.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.															.	.	.																																										.	.
Query SS confidence										.	.	.	.	.	.	.															.	.	.																																										.	.
Query Sequence	K	N	S	K	A	I	L	Q	V	.	.	.	.	.	.	.	P	G	T	M	K	I	I	S	A	E	I	P	V	P	.	.	.	K	E	D	E	V	L	I	K	V	E	Y	V	G	I	C	G	S	D	V	H	G	F	E	S	G	P	F	I	P	P	K	D	P	N	Q	E	I	G	L	G	H	.	.	E	C	A	G
Query Conservation										.	.	.	.	.	.	.															.	.	.																																										.	.
Alig confidence										.	.	.	.	.	.	.															.	.	.																											.															.	.
Template Conservation																																																												.
Template Sequence	T	N	K	Q	V	I	L	K	D	Y	V	S	G	F	P	T	E	S	D	F	D	F	T	T	T	T	V	E	L	R	V	P	E	G	T	N	S	V	L	V	K	N	L	Y	L	S	C	D	P	Y	M	R	I	R	M	G	K	P	D	.	P	S	T	A	A	L	A	Q	A	Y	T	P	G	Q	P	I	Q	G	Y	G
Template Known Secondary structure				B				S	S		B	S	S	S			G	G	G											S				S	S	S													G	G	G	G	T	T	T	B				.	T	T	T	T			.					T	T	S	B
Template Predicted Secondary structure																																																												.
Template SS confidence
	1004	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.		.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.

	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	V	A	V	G	S	R	V	R	K	F	K	P	G	D	R	V	N	I	E	P	G	V	P	C	G	H	C	R	Y	C	L	E	G	K	Y	N	I	C	P	D	V	D	F	M	A	T	Q	P	N	Y	R	G	A	L	T	H	Y	L	C	H	P	E	S	F	T	Y	K	L	P	D	N	M	D	T	M	E	G	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	S	R	I	I	E	S	G	H	P	D	Y	K	K	G	D	L	L	W	G	I	V	A	W	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	S	V	I	T	P	M	T	H	A	H	F	K	I	Q	H	T	D	V	P	L	S	Y	Y	T
Template Known Secondary structure									S	T	T			T	T									S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							T	T	T								S	S		G	G	G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1083	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.																														.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.

	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence	L	.	.	.	V	E	P	A	A	V	G	M	H	A	A	M	L	A	D	V	K	P	G	K	K	I	I	I	L	G	A	G	C	I	G	L	M	T	L	Q	A	C	K	C	L	G	A	T	E	I	A	V	V	D	V	L	E	K	R	L	A	M	A	E	Q	L	G	A	T	V	V	I	N	G	A	K	E	D	T	I
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence	G	L	L	G	M	P	G	M	T	A	Y	A	G	F	Y	E	V	C	S	P	K	E	G	E	T	V	Y	V	S	A	A	S	G	A	V	G	Q	L	V	G	Q	L	A	K	M	M	G	C	Y	V	V	G	S	A	G	S	K	E	K	V	D	L	L	K	T	K	F	G	F	D	D	A	F	N	Y	K	E	E	S	D
Template Known Secondary structure	T	T	T	S												T	T	S				T	T						S	S		S	S	T	T										T	T	T								S	S	T	T							T	T	T			S					T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
	1134	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence	A	R	C	Q	Q	F	T	E	D	M	G	A	D	I	V	F	E	T	A	G	S	A	V	T	V	K	Q	A	P	Y	L	V	M	R	G	G	K	I	M	I	V	G	T	V	.	.	.	.	.	.	.	P	G	D	S	A	I	N	F	L	K	I	N	R	E	V	T	I	Q	T	V	F	.	.	.	.	.	.	R	Y
Query Conservation																																													.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence	L	T	A	A	L	K	R	C	F	P	N	G	I	D	I	Y	F	E	N	V	G	G	K	M	L	D	A	V	L	V	N	M	N	M	H	G	R	I	A	V	C	G	M	I	S	Q	Y	N	L	E	N	Q	E	G	V	H	N	L	S	N	I	I	Y	K	R	N	R	I	Q	G	F	V	V	S	D	F	Y	D	K	Y
Template Known Secondary structure										T	T		B	S					S	S		T										B		T	T									T	T	G	G	G		S	S							G	G	G	G	G	T	S									G	G	G	G	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	1214	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.

	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	R	Y	P	V	T	I	E	A	I	S	S	G	R	F	D	V	K	S	M	V	T	H	I	Y	D	Y	R	D	V	Q	Q	A	F	E	E	S	V	N	N	K	R	D	I	I	K	G	V	I	K	I	S	D
Query Conservation
Alig confidence																				.	.																						.
Template Conservation																				.	.																						.
Template Sequence	S	K	F	L	E	F	V	L	P	H	I	R	E	G	K	I	T	Y	V	.	.	E	D	V	A	D	G	L	E	K	A	P	E	A	L	V	G	L	F	H	G	K	.	N	V	G	K	Q	V	V	V	V	A	R
Template Known Secondary structure												T	T	T	S					.	.					B	S	G	G	G								T	T	T	T		.		S	S						S	S
Template Predicted Secondary structure																				.	.																						.
Template SS confidence
	1294	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.			.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.		.	.	.	.	.	.	1340	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions