Phyre 2 alignment of P77280 with c2cdaA

Job Description P77280
Confidence 100.00% Date Thu Jan 5 12:27:11 GMT 2012

Rank 34 Aligned Residues 335

% Identity 16% Template c2cdaA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glucose dehydrogenase; PDBTitle: sulfolobus solfataricus glucose dehydrogenase 1 in complex2 with nadp

Resolution 2.28 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure														.											.
Query SS confidence														.											.
Query Sequence	M	K	N	S	K	A	I	L	Q	V	P	G	T	.	M	K	I	I	S	A	E	I	P	V	.	P	K	E	D	E	V	L	I	K	V	E	Y	V	G	I	C	G	S	D	V	H	G	F	E	S	G	P	F	I	P	P	K	D	P	N	Q	E	I	G	L	G	H	E	C	A	G	T	V	V	A	V	G	S	R	V
Query Conservation														.											.
Alig confidence			.	.										.											.																														.	.	.	.	.																				.	.
Template Conservation			.	.																																																			.	.	.	.	.																				.	.
Template Sequence	M	K	.	.	A	I	I	V	K	P	P	N	A	G	V	Q	V	K	D	V	D	E	K	K	L	D	S	Y	G	K	I	K	I	R	T	I	Y	N	G	I	C	G	T	D	R	E	I	V	N	G	K	L	K	G	.	.	.	.	.	K	D	F	L	V	L	G	H	E	A	I	G	V	V	E	E	S	Y	H	.	.
Template Known Secondary structure			.	.						T	T	S										G	G	G	S				S	S																			T	T					.	.	.	.	.		S						S							S	S			S	.	.
Template Predicted Secondary structure			.	.																																																			.	.	.	.	.																				.	.
Template SS confidence
	1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																													.																																		.	.
Query SS confidence																																													.																																		.	.
Query Sequence	R	K	F	K	P	G	D	R	V	N	I	E	P	G	V	P	C	G	H	C	R	Y	C	L	E	G	K	Y	N	I	C	P	D	V	D	F	M	A	T	Q	P	N	Y	R	.	G	A	L	T	H	Y	L	C	H	P	E	S	F	T	Y	K	L	P	D	N	M	D	T	M	E	G	A	L	V	E	P	A	A	.	.
Query Conservation																																													.																																		.	.
Alig confidence	.																																												.																																		.	.
Template Conservation	.
Template Sequence	.	G	F	S	Q	G	D	L	V	M	P	V	N	R	R	G	C	G	I	C	R	N	C	L	V	G	R	P	D	F	C	E	T	G	E	F	G	E	A	G	I	H	K	M	D	G	F	M	R	E	W	W	Y	D	D	P	K	Y	L	V	K	I	P	K	S	I	E	D	I	G	I	L	A	Q	P	L	A	D	I	E
Template Known Secondary structure	.	S			T	T							S					S	S	S					T	T		G	G	G		S	S	S						T	T	B					S		B	S						G	G	G						G	G	G	T	T	T	G	G	G
Template Predicted Secondary structure	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

											156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	V	G	M	H	A	A	M	L	A	D	V	K	P	G	K	K	I	I	I	L	G	A	G	C	I	G	L	M	T	L	Q	A	C	K	C	L	G	A	T	E	I	A	V	V	D	V	L	E	K	R	L	A	M	A	E	Q	L	G	A	T	V	V	I	N	G	A	K	E	D	T
Query Conservation	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	S	I	E	E	I	L	E	V	Q	K	R	V	P	V	W	T	C	D	D	G	T	L	N	C	R	K	V	L	V	V	G	T	G	P	I	G	V	L	F	T	L	L	F	R	T	Y	G	L	E	V	W	M	A	N	R	R	E	P	T	E	V	E	Q	T	V	I	E	E	T	K	T	N	Y	Y	N	S	S	N	G
Template Known Secondary structure										G	G	G	S	S			S		T	T	S	S	S	T	T																						T	T								S	S														T							T	T
Template Predicted Secondary structure
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.													.
Query SS confidence																																																							.	.	.	.	.													.
Query Sequence	I	A	R	C	Q	Q	F	T	E	D	M	G	A	D	I	V	F	E	T	A	G	S	A	V	T	V	K	Q	A	P	Y	L	V	M	R	G	G	K	I	M	I	V	G	T	V	P	G	D	S	A	I	N	F	L	.	.	.	.	.	K	I	N	R	E	V	T	I	Q	T	V	F	.	R	Y	A	N	R	Y	P	V
Query Conservation																																																							.	.	.	.	.													.
Alig confidence										.																																													.	.	.	.	.													.
Template Conservation										.
Template Sequence	Y	D	K	L	K	D	S	V	G	.	K	F	D	V	I	I	D	A	T	G	A	D	V	N	I	L	G	N	V	I	P	L	L	G	R	N	G	V	L	G	L	F	G	F	S	T	S	G	S	V	P	L	D	Y	K	T	L	Q	E	I	V	H	T	N	K	T	I	I	G	L	V	N	G	Q	K	P	H	F	Q	Q
Template Known Secondary structure	S							T		.												B	T							G	G	G											S				B																T	T
Template Predicted Secondary structure										.
Template SS confidence
	237	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence	T	I	E	A	I	S	S	G	R	F	.	.	.	.	D	V	K	S	M	V	T	H	I	Y	D	Y	R	D	V	Q	Q	A	F	E	E	S	V	N	N	K	R	D	I	I	K	G	V	I	K	I	S
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.
Template Conservation
Template Sequence	A	V	V	H	L	A	S	W	K	T	L	Y	P	K	A	A	K	M	L	I	T	K	T	V	S	I	N	D	E	K	E	L	L	K	V	L	R	E	K	E	H	G	E	I	K	I	R	I	L	W	E
Template Known Secondary structure												S					T	T	S							T	T														T	T
Template Predicted Secondary structure
Template SS confidence
	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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