Job Description P77280 Confidence 100.00% Date Thu Jan 5 12:27:11 GMT 2012 Rank 52 Aligned Residues 309 % Identity 19% Template c1y9eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		M	K	N	S	K	A	I	L	Q	.	.	.	V	P	G	T	M	K	I	I	S	A	E	I	P	V	P	K	E	D	E	V	L	I	K	V	E	Y	V	G	I	C	G	S	D	V	H	G	F	E	S	G	P	F	I	P	P	K	D	P	N	Q	E	I	G	L	G	H	E	C	A	G	T	V	V	A	V	G	S	R
Query Conservation											.	.	.
Alig confidence				.	.						.	.	.																																								.	.	.																							.	.
Template Conservation				.	.																																																.	.	.																							.	.
Template Sequence		F	Q	.	.	A	L	Q	A	E	K	N	A	D	D	V	S	V	H	V	K	T	I	S	T	E	D	L	P	K	D	G	V	L	I	K	V	A	Y	S	G	I	N	Y	K	D	G	L	A	G	K	A	.	.	.	G	G	N	I	V	R	E	Y	P	L	I	L	G	I	D	A	A	G	T	V	V	S	.	.	S	N
Template Known Secondary structure				.	.	B							T	T					B						G	G	G	S		S	S	S																			S	T	.	.	.	T		S				S	S						S								S	.	.		S
Template Predicted Secondary structure				.	.																																																.	.	.																							.	.
Template SS confidence
		5	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	K	F	K	P	G	D	R	V	N	I	E	P	G	V	P	C	G	H	C	R	Y	C	L	E	G	K	Y	N	I	C	P	D	V	D	F	M	A	T	Q	P	N	Y	R	G	A	L	T	H	Y	L	C	H	P	E	S	F	T	Y	K	L	P	D	N	M	D	T	M	E	G	A	L	V	E	P	A	A	V	G
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	R	F	A	E	G	D	E	V	I	A	T	S	Y	E	L	G	V	S	R	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	E	Y	A	S	V	P	G	D	W	L	V	P	L	P	Q	N	L	S	L	K	E	A	X	V	Y	G	T	A	G	F	T
Template Known Secondary structure			T	T			T	T							S	T	T	B	T	T	T	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B	S						G	G	G						T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100																								.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		158	.	160	.						.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		M	H	A	A	.	.	.	.	.	M	L	A	D	V	K	P	G	K	K	I	I	I	L	G	A	G	C	I	G	L	M	T	L	Q	A	C	K	C	L	G	A	T	E	I	A	V	V	D	V	L	E	K	R	L	A	M	A	E	Q	L	G	A	T	V	V	I	N	G	A	K	E	D	T	I	A	R	C	Q	Q	F
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.																																																												.	.
Template Conservation																																																																						.	.
Template Sequence		A	A	L	S	V	H	R	L	E	Q	N	G	L	S	P	E	K	G	S	V	L	V	T	G	A	T	G	G	V	G	G	I	A	V	S	X	L	N	K	R	G	Y	D	V	V	A	S	T	G	N	R	E	A	A	D	Y	L	K	Q	L	G	A	S	E	V	I	S	R	.	.	E	D	V	Y	D	G	T	L	K	A
Template Known Secondary structure											T	T	T			T	T	S						S	S	T	T	S													T	T								S		T	T	T							T	T		S						.	.				S	S	S				S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.								.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																											.	.																					.	.	.	.	.	.	.
Query SS confidence																																											.	.																					.	.	.	.	.	.	.
Query Sequence		T	E	D	M	G	A	D	I	V	F	E	T	A	G	S	A	V	T	V	K	Q	A	P	Y	L	V	M	R	G	G	K	I	M	I	V	G	T	V	P	G	D	.	.	S	A	I	N	F	L	K	I	N	R	E	V	T	I	Q	T	V	F	R	Y	.	.	.	.	.	.	.	A	N	R	Y	P	V	T	I	E	A
Query Conservation																																											.	.																					.	.	.	.	.	.	.
Alig confidence																		.																									.	.																					.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		L	S	K	Q	Q	W	Q	G	A	V	D	P	V	G	G	K	.	Q	L	A	S	L	L	S	K	I	Q	Y	G	G	S	V	A	V	S	G	L	T	G	G	G	E	V	P	A	T	V	Y	P	F	I	L	R	G	V	S	L	L	G	I	D	S	V	Y	C	P	X	D	V	R	A	A	V	W	E	R	X	S	S	D
Template Known Secondary structure		S						S					S					.							T	T			T	T									T	T		S						S															S	T	T													T	T	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	G	R	F	D	V	K	S	M	V	T	H	I	Y	D	Y	R	D	V	Q	Q	A	F	E	E	S	V	N	N	K	R	D	I	I	K	G	V	I	K	I
Query Conservation
Alig confidence											.	.																						.
Template Conservation											.	.																						.
Template Sequence		L	K	P	D	Q	L	L	T	I	.	.	V	D	R	E	V	S	L	E	E	T	P	G	A	L	K	D	I	L	Q	N	R	.	I	Q	G	R	V	I	V	K	L
Template Known Secondary structure		T			S		S	G	G	G	.	.							S	T	T								S	S	S	S		.		S	S					B
Template Predicted Secondary structure											.	.																						.
Template SS confidence
		292	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions