Job Description P0ABU0 Confidence 100.00% Date Thu Jan 5 11:16:22 GMT 2012 Rank 39 Aligned Residues 254 % Identity 20% Template c2d3tB_ PDB info PDB header:lyase, oxidoreductase/transferase Chain: B: PDB Molecule:fatty oxidation complex alpha subunit; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v Resolution 3.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100
Predicted Secondary structure																								.																																																								.
Query SS confidence																								.																																																								.
Query Sequence		E	D	I	R	Y	E	K	S	T	D	G	I	A	K	I	T	I	N	R	P	Q	V	.	R	N	A	F	R	P	L	T	V	K	E	M	I	Q	A	L	A	D	A	R	Y	D	D	N	I	G	V	I	I	L	T	G	A	G	D	K	A	F	C	S	G	G	D	Q	K	V	R	G	D	Y	G	G	Y	K	D	.	D
Query Conservation																								.																																																								.
Alig confidence																								.																																			.																					.
Template Conservation																																																											.
Template Sequence		K	A	I	T	V	T	A	L	E	S	G	I	V	E	L	K	F	D	L	K	G	E	S	V	N	K	F	N	R	L	T	L	N	E	L	R	Q	A	V	D	A	I	K	A	D	A	S	V	K	G	V	I	V	S	S	G	K	.	D	V	F	I	V	G	A	D	I	T	E	F	V	E	N	F	K	L	P	D	A	E
Template Known Secondary structure		S	S							G	G	G									T	T	S	S	S		B																	T	T		T	T									S	S	.	S	S	S	B	B											T	S	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	H	H	L	N	V	L	D	F	Q	R	Q	I	R	T	C	P	K	P	V	V	A	M	V	A	G	Y	S	I	G	G	G	H	V	L	H	M	M	C	D	L	T	I	A	A	D	N	A	I	F	G	Q	T	G	P	K	V	G	S	F	D	G	G	W	G	A	S	Y	M	A	R	I	V	G	Q	K	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	A	G	N	L	E	A	N	K	I	F	S	D	F	E	D	L	N	V	P	T	V	A	A	I	N	G	I	A	L	G	G	G	L	E	M	C	L	A	A	D	F	R	V	M	A	D	S	A	K	I	G	L	P	E	V	K	L	G	I	Y	P	G	F	G	G	T	V	R	L	P	R	L	I	G	V	D	N	A
Template Known Secondary structure																		S		S	S								S				T									S	S						T	T						G	G	G	G	G	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	I	W	F	L	C	R	Q	Y	D	A	K	Q	A	L	D	M	G	L	V	N	T	V	V	P	L	A	D	L	E	K	E	T	V	R	W	C	R	E	M	L	Q	N	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	W	I	A	S	G	K	E	N	R	A	E	D	A	L	K	V	S	A	V	D	A	V	V	T	A	D	K	L	G	A	A	A	L	D	L	I	K	R	A	I	S	G	E	L	D	Y	K	A	K	R	Q	P	K	L	E	K	L	K	L	N	A	I	E	Q	M	M	A	F	E	T	A	K	G	F	V	A	G	Q
Template Known Secondary structure											B								T	T	S	S	S					T	T	T														S	S	S	S							G	G	G	G	S			S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
							227	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.														.
Query SS confidence		.	.	.	.	.														.
Query Sequence		.	.	.	.	.	M	A	L	R	C	L	K	A	A	L	N	A	D	.	C	D	G	Q	A	G	L	Q	E	L	A	G	N	A	T	M	L	F	Y	M	T	E	E	G	Q	E	G	R	N	A	F	N	Q	K	R	Q	P	D
Query Conservation		.	.	.	.	.														.
Alig confidence		.	.	.	.	.														.
Template Conservation
Template Sequence		A	G	P	N	Y	P	A	P	V	E	A	I	K	T	I	Q	K	A	A	N	F	G	R	D	K	A	L	E	V	E	A	A	G	F	A	K	L	A	K	T	S	A	S	N	C	L	I	G	L	F	L	N	D	Q	E	L	K
Template Known Secondary structure		T		T	T														G	G	G	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions