Job Description Q46906 Confidence 26.11% Date Thu Jan 5 12:35:44 GMT 2012 Rank 431 Aligned Residues 127 % Identity 13% Template c3pfmA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf Resolution 2.91 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.
Query Sequence		I	S	N	I	V	K	K	I	K	N	A	G	K	Y	A	F	I	H	V	D	L	L	E	G	A	S	N	K	E	V	V	I	Q	F	L	K	L	V	T	E	A	D	G	.	.	.	.	.	.	.	.	I	I	S	T	K	.	.	.	.	.	.	.	.	A	S	M	L	K	A	A	R	A	E	G	F	F	C	I	H
Query Conservation																																													.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.
Alig confidence																								.	.																				.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		L	E	Q	V	L	R	Q	X	A	S	H	E	D	C	L	A	L	N	L	S	A	A	.	.	T	L	A	D	P	H	A	L	N	R	V	F	E	I	L	R	Q	H	S	D	L	G	P	R	L	T	L	E	I	G	E	E	Q	L	P	E	Q	A	X	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L
Template Known Secondary structure									G	G	G													.	.																		T	G	G	G	T	T	T							S	S	S																		T
Template Predicted Secondary structure																								.	.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.			.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.													.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	F	I	V	D	S	I	S	F	H	N	I	D	K	Q	V	A	Q	S	N	P	D	C	I	E	I	L	P	G	.	.	.	.	.	.	.	.	.	.	.	.	C	M	P	K	V	L	G	W	V	T	E	K	I	R	Q	P	L	I	A	G	G	L	V	C	D	E	E	D	A	R	N	A	I	N	A	G	V	V
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation													.	.	.	.																																																	.
Template Sequence		Q	R	F	G	G	R	F	S	X	I	G	.	.	.	.	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	D	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	.	V	E	T	E	G	E	L	Q	V	I	R	E	X	G	L	Y
Template Known Secondary structure					T	T	T	G	G	G	G	G	.	.	.	.	G					T		S						G	G	G	G	T	T	T	T	T		T																T	T								.			S											T		S
Template Predicted Secondary structure													.	.	.	.																																																	.
Template SS confidence
		560	.	.	.	.	.	.	.	.	.	570					.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.		.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
		175	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		635	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions