 |
Job Description | Q46906 | Confidence | 41.93% | Date | Thu Jan 5 12:35:44 GMT 2012 |
Rank | 330 | Aligned Residues | 125 |
% Identity | 12% | Template | c3jr2D_ |
PDB info |
PDB header:biosynthetic protein | Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; |
PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961
|
Resolution | 1.80 Å |
|
 |
  |   |
44 | . | . | . | . | . | 50 | . | . | . | |
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
|
. | 90 | . | . | . | |
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . |
|
|  |  |  | . | . | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | N | I | V | K | K | I | K | N | A | . |
. |
G | K | Y | A | F | I | H | V | D | L | L | E | G | A | S | N | K | E | V | V | I | Q | F | L | K | L | V | T | E | A | D | G | I | I | S | . |
. |
. |
. |
T | K | A | S | M | . |
. |
. |
L | K | A | A | R | A | E | G | F | F | C | I | H | R | L | F | I | V | D | S | I |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |   | . | . |
|
|   |
|
|
|
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |   |   |
|
|
|
|
| . | . | . | . |
|
|   |   |   | . | . | . |
|   |   |
|
|   |   |
|
|   |
|
|
|
|   |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |
| . |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
X | K | A | V | S | T | L | R | H | N | H | P | N | H | I | L | V | C | D | X | K | T | T | D | G | G | . |
. |
. |
A | I | L | S | R | X | A | F | E | A | G | . |
A | D | W | I | T | V | S | A | A | A | H | I | A | T | I | A | A | C | K | K | V | A | D | E | L | N | G | E | I | Q | I | E | I | Y | G | N | W | T | X |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  |  |  |
| S |
|  | . | . | . |  |  |  |  |  |  |  |  |  |  | T | . |
| S |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
| S | S |
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |
|
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
44 | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
|
70 | . | . | . | . | . | . | . | . | . | 80 | |
. | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
  |
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | 140 | . | . | . | . | . | . | . | . | |
|
. | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | F | H | N | I | D | K | Q | V | A | Q | S | N | P | D | C | I | E | I | L | P | G | C | . |
. |
. |
. |
. |
. |
. |
. |
. |
M | P | K | V | L | G | W | V | T | E | K | . |
. |
I | R | Q | P | L | I | A | G | G | L | V | C | D | E | E | D | A | R | N | A | I | N | A | G | V | V | A | L |
Query Conservation |   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|   | . | . | . | . | . | . | . | . | . |   |
|   |   |
|   |   |
|   |   |   | . | . |   |   |   |
|
|
|
|
|
|
|
|   |   |   |
|
|
|   |   |
|
|   |
|
|
|   |
|
|
Alig confidence |   |
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
| . |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
Template Sequence |   |
Q | . |
. |
. |
D | A | K | A | W | V | D | L | G | I | T | Q | A | I | Y | H | R | S | R | D | A | E | L | A | G | I | G | W | T | T | D | D | L | D | K | X | R | Q | L | S | A | L | G | I | E | L | S | I | T | G | G | I | . |
V | P | E | D | I | Y | L | F | E | G | I | K | T | K | T | F |
Template Known Secondary structure |   |
 | . | . | . |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  | T |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  | S | S |
| . |
| G | G | G | G | G | G | G | T | T | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
 | . | . | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
120 | |
|
|
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|