 |
Job Description | Q46906 | Confidence | 22.90% | Date | Thu Jan 5 12:35:44 GMT 2012 |
Rank | 457 | Aligned Residues | 61 |
% Identity | 16% | Template | c1njjC_ |
PDB info |
PDB header:lyase | Chain: C: PDB Molecule:ornithine decarboxylase; |
PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418
|
Resolution | 2.45 Å |
|
 |
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | F | I | V | D | S | I | S | F | H | N | I | D | K | Q | V | A | Q | S | N | P | D | C | I | E | I | L | P | G | C | . |
. |
. |
. |
M | P | K | V | L | G | W | V | T | E | K | I | R | Q | P | L | I | A | G | G | L | V | C | D | E | E | D | A | R | N | A | I | N | A | G | V | V |
Query Conservation |   |
  |
|
|
|
|
|   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|   | . | . | . | . |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |
|
|
|   |   |
|
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   | . |   |   |   |   |   |
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |
| . | . | . | . | . |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
F | F | V | A | D | L | G | D | I | V | R | K | H | E | T | W | K | K | C | L | P | R | V | . |
T | P | F | Y | A | V | K | C | N | D | D | W | R | V | L | G | T | L | A | A | L | G | . |
. |
. |
. |
. |
T | G | F | D | C | A | S | N | T | E | I | Q | R | V | R | G | I | G | V | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |  | . |  |  |  |  |  | G | G | G |
|
|
|  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . |
|  |  |  |  |
| S |  |  |  |  |  |  |  |  |  | T | T |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|