Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 5 Aligned Residues 225 % Identity 21% Template c3q8lA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ Resolution 2.32 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20														.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	S	P	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.																.	.
Template Conservation																																																				.	.																.	.
Template Sequence		F	G	R	K	V	A	I	D	A	S	M	S	I	Y	Q	F	L	I	A	V	R	Q	G	G	D	V	L	Q	N	E	E	G	E	T	T	S	H	L	M	G	M	F	Y	R	T	I	R	M	M	E	.	.	N	G	I	K	P	V	Y	V	F	D	G	K	P	P	Q	.	.	L	K	S	G	E	L	A	K	R	S	E
Template Known Secondary structure		T	T																					T	T				B		T	T	S		B																	.	.	T	T										S			G	.	.	G	G
Template Predicted Secondary structure																																																				.	.																.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.
		69	70	.	.	.	.	.	.	.	.	.																								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	P	P	M	P	E	E	L	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I	V	S
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.														.	.	.	.
Template Conservation																																																								.														.	.	.	.
Template Sequence		R	R	A	E	A	E	K	Q	L	Q	Q	A	Q	A	A	G	A	E	Q	E	V	E	K	F	T	K	R	L	V	K	V	T	K	Q	H	N	D	E	C	K	H	L	L	S	L	M	G	I	P	Y	L	D	A	P	.	S	E	A	E	A	S	C	A	A	L	V	K	A	.	.	.	.	G	K	V	Y	A	A	A	T
Template Known Secondary structure																T	T																															T							S	.	S												T	.	.	.	.	T	S	S	S
Template Predicted Secondary structure																																																								.														.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		T	D	K	G	Y	C	Q	L	L	S	P	T	L	R	I	R	D	Y	F	Q	K	R	W	.	.	.	.	.	.	L	D	A	P	F	I	D	K	E	F	G	V	Q	P	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																										.	.
Template Conservation																																																								.	.
Template Sequence		E	D	M	D	C	L	T	F	G	S	P	V	L	M	R	H	L	T	A	S	E	A	K	K	L	P	I	Q	E	F	H	L	S	R	I	L	Q	E	L	G	L	N	Q	E	Q	F	V	D	L	C	I	L	L	G	.	.	S	D	Y	C	E	S	I	R	G	I	G	P	K	R	A	V	D	L	I	Q	K	H	K	S
Template Known Secondary structure		S		T					T	T		S					S					T	T			S															T															.	.	B	T	T	B				T	T															S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		L	E	G	I	Y	E	N	L	D	A	V	A	E	K	W	.	R	K	K	L	E	T	H	K	E	M	A	F	L	C	R	D	I	A	R	L	Q	T	D
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		I	E	E	I	V	R	R	L	D	P	N	K	Y	P	V	P	E	N	W	L	H	K	E	A	H	Q	L	F	L	E	P	E	V	L	D	P	E	S	V
Template Known Secondary structure									S		T	T	T	S				T	T												S						T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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