Job Description P38506 Confidence 94.94% Date Thu Jan 5 11:58:11 GMT 2012 Rank 40 Aligned Residues 189 % Identity 15% Template c3pifD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese Resolution 2.92 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																					.	.																							.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																							.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	Q	G	S	P	.	.	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	.	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.																							.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																							.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	L	D	M	N	S	I	L	H	N	C	T	H	G	R	L	S	E	E	E	V	Y	S	K	I	F	S	Y	I	D	H	L	F	H	T	I	K	P	K	Q	T	F	Y	M	A	I	D	G	V	A	P	R	A	K	M	N	Q	Q	R	A	R	R	F	R	T	A	M	D	A	E	K	A	L	Q	K	A	F	D	S
Template Known Secondary structure																																																			S			G	G	G																			T	T	T				G
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
					71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure		.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.
Query SS confidence		.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.
Query Sequence		.	.	.	P	P	M	P	E	E	L	H	D	E	M	P	A	L	R	A	A	F	E	Q	R	.	.	.	.	.	.	.	.	G	V	P	C	W	S	.	.	.	.	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	.	.	.	.	.	G	H	Q	A	T	I	V	S	T	D	K	G	Y
Query Conservation		.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.																					.	.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.				.																	.	.	.	.	.
Template Conservation																																															.
Template Sequence		N	A	I	T	P	G	T	E	F	M	A	K	L	T	E	N	L	K	Y	F	I	H	D	K	I	T	N	D	T	R	W	Q	N	V	K	V	I	F	S	G	H	E	V	P	G	.	E	G	Q	H	K	I	M	D	Y	I	R	A	I	R	A	Q	E	D	Y	N	P	N	T	R	H	C	I	Y	G	L	D	A	D	L
Template Known Secondary structure		G	G		S	T	T																							S	G	G	G	G	S							T	T	S		S	.																S	T	T			T	T								S		T
Template Predicted Secondary structure																																															.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		131	.	.	.					.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.	.	.	.	.														.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure						.	.	.	.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Query SS confidence						.	.	.	.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Query Sequence		C	Q	L	L	.	.	.	.	S	P	T	L	R	I	R	D	Y	.	.	.	.	.	.	.	F	Q	K	R	W	L	D	A	P	F	I	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	G	V	Q	P	Q	Q	L	P	D	.	.	.	.	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V
Query Conservation						.	.	.	.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Alig confidence						.	.	.	.										.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.							.	.
Template Conservation																																																																									.	.
Template Sequence		I	I	L	G	L	S	T	H	D	H	H	F	C	L	L	R	E	E	V	T	T	L	E	T	Q	N	F	F	L	L	H	L	S	I	L	R	E	Y	L	A	L	E	F	E	E	I	T	D	S	V	Q	F	E	Y	D	F	E	R	V	L	D	D	F	I	F	V	L	F	T	I	G	.	.	N	D	F	L	P	N	L
Template Known Secondary structure							T	T			S	S											T	T	T	S																		G	G	G		S	S	S		S	S																				.	.		S	S	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S	L	E	G	I	Y	E
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		P	D	L	H	L	K	K	.	.	.	.	.	.	.	.	G	A	F	P	V	L	L	Q
Template Known Secondary structure		T	T			G	G	G	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.									.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions