Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 8 Aligned Residues 233 % Identity 20% Template c3oryA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.															.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																.	.
Template Conservation																																																					.	.																.	.
Template Sequence		H	G	K	I	I	V	I	D	G	Y	N	A	L	Y	Q	F	L	A	A	I	R	Q	P	D	G	T	P	L	M	D	N	N	G	R	I	T	S	H	L	S	G	L	F	Y	R	T	I	N	I	V	E	.	.	A	G	I	K	P	V	Y	V	F	D	G	K	P	P	E	.	.	L	K	A	R	E	I	E	R	R	K
Template Known Secondary structure		T	T																			B		T	T	S		B		B		T	T	S		B																	.	.	T	T									S	S		G	G	.	.	G
Template Predicted Secondary structure																																																					.	.																.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80																								.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	R	P	P	M	P	E	E	L	H	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I	V
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.														.	.	.	.
Template Conservation																																																									.														.	.	.	.
Template Sequence		A	V	K	E	E	A	A	K	K	Y	E	E	A	V	Q	S	G	D	L	E	L	A	R	R	Y	A	M	M	S	A	K	L	T	E	E	M	V	R	D	A	K	S	L	L	D	A	M	G	I	P	W	V	Q	A	P	.	A	E	G	E	A	Q	A	A	Y	I	V	K	K	.	.	.	.	G	D	A	Y	A	S	A
Template Known Secondary structure																		T									T																						T							S	.	S												T	.	.	.	.	T	S		S
Template Predicted Secondary structure																																																									.														.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Query Sequence		S	T	D	K	G	Y	C	Q	L	L	S	P	T	L	R	I	R	D	Y	F	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	L	D	A	P	F	I	D	K	E	F	G	V	Q	P	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	.	P	G	V	A	G	I	G	P	K
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.					.
Template Conservation																																																																		.	.
Template Sequence		S	Q	D	Y	D	S	L	L	F	G	S	P	K	L	V	R	N	L	T	I	S	G	R	R	K	L	P	R	K	N	E	Y	V	E	V	K	P	E	L	I	E	L	D	K	L	L	V	Q	L	G	I	T	L	E	N	L	I	D	I	G	I	L	L	G	.	.	T	D	Y	N	P	D	G	F	E	G	I	G	P	K
Template Known Secondary structure			S	S	S					T	T		S					S	T	T	T							S	S	T	T																				T															.	.	B	T	T	B	T	T		S	T	T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	T	Q	L	L	V	E	F	Q	S	L	E	G	I	Y	E	N	L	D	A	V	A	E	K	W	R	K	K	L	E	T	H	K	E	M	A	F	L	C	R	D	I	A	R	L	Q	T	D	L	H	I	D	G	N	L	Q	Q	L	R
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		K	A	L	Q	L	V	K	A	Y	G	G	I	E	K	I	P	K	P	I	L	K	S	P	I	E	V	D	V	I	.	.	.	A	I	K	K	Y	F	L	Q	P	Q	V	T	D	N	Y	R	I	E	W	H	T	P	D	P	D	A	V	K
Template Known Secondary structure											T	S	S	T	T	S		G	G	G				S	S						.	.	.								S					S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions