Job Description P38506 Confidence 96.56% Date Thu Jan 5 11:58:11 GMT 2012 Rank 33 Aligned Residues 198 % Identity 18% Template c3fqdA_ PDB info PDB header:hydrolase/protein binding Chain: A: PDB Molecule:5'-3' exoribonuclease 2; PDBTitle: crystal structure of the s. pombe rat1-rai1 complex Resolution 2.20 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																					.	.	.	.	.	.	.																							.																									.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																							.																									.	.	.	.	.	.	.
Query Sequence		L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	Q	G	S	P	.	.	.	.	.	.	.	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	.	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A	G	R	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.																							.																									.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																							.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	L	D	X	N	G	I	V	H	P	C	S	H	P	E	D	R	P	A	P	E	T	E	D	E	X	X	V	A	V	F	E	Y	T	D	R	I	L	A	X	V	R	P	R	Q	L	L	F	I	A	I	D	G	V	A	P	R	A	K	X	N	Q	Q	R	S	R	R	F	R	S	S	R	E	A	A	L	K	E	E
Template Known Secondary structure						T									S		S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
																																	71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	M	P	E	E	L	H	D	E	M	P	A	L	R	A	A	F	E	Q	R	.	.	.	.	.	.	.	.	G	V	P	C	W	S	.	.	.	.	T	S	G	N	E	A	D	D	L	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.	.	.	.				.
Template Conservation																																																																											.
Template Sequence		E	L	Q	A	F	I	E	E	A	K	Q	Q	G	I	P	I	D	E	N	A	T	K	K	K	S	W	D	S	N	C	I	T	P	G	T	P	F	X	D	T	L	A	K	S	L	R	Y	Y	I	I	N	K	L	N	S	D	P	C	W	R	N	V	R	F	I	L	S	D	A	S	V	P	G	.	E	G	E	H	K	I
Template Known Secondary structure														T			B						S						G	G	G	S	S	T	T	S																			T	S		G	G	G	T	T								T	T	S		S	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210
		108	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																				.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	L	A	V	K	V	T	Q	A	.	.	.	.	.	G	H	Q	A	T	I	V	S	T	D	K	G	Y	C	Q	L	L	.	.	.	.	S	P	T	L	R	I	R	D	Y	F	Q	K	R	W	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	F	I	D	K	E	F	G
Query Conservation												.	.	.	.	.																		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	E	F	I	R	S	Q	R	V	K	P	E	Y	D	P	N	T	H	H	V	V	Y	G	L	D	A	D	L	I	X	L	G	L	A	T	H	E	P	H	F	R	V	L	R	E	D	V	F	K	E	E	R	L	G	I	K	R	L	D	D	K	P	F	I	W	L	N	V	S	I	L	R	E	Y	L	E	V	E	L	Y
Template Known Secondary structure										T	S	T	T	S		T	T										T	T								T	T		S	S											T	T	T	T	T			B	T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	P	.	.	.	.	.	.	.	.	.	.	.	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	F	Q	S	L	E	G	I	Y	E	N	L	D	A	V	A	E	K	W
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.												.	.															.	.	.	.	.	.	.	.
Template Conservation																											.	.															.	.	.	.	.	.	.	.
Template Sequence		V	P	N	L	P	F	P	F	D	L	E	R	A	I	D	D	W	V	F	F	I	F	F	V	G	.	.	N	D	F	L	P	H	L	P	S	L	D	I	R	D	.	.	.	.	.	.	.	.	G	A	V	E	R	L	T	E	I	W	R	A	S	L	P	H	X
Template Known Secondary structure			T	T		S	S															G	G	G	G		.	.		S	S	S				T	T			G	G	G	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																											.	.															.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.									.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions