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Job DescriptionP38506
Confidence96.79%DateThu Jan 5 11:58:11 GMT 2012
Rank29Aligned Residues182
% Identity18%Templatec2y35A_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:ld22664p; PDBTitle: crystal structure of xrn1-substrate complex
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LIVDALNLIRRIHAVQGSP. . . CVETCQHALDQLIMHSQPTHAV. AVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDE.
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Template Sequence  LYLDMNGIVHNCSHPFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQ
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   32.......40.........50.........60.........70.........80.........90.........100.........110.
 
   81........90. ...... ..100.........110....... ..120.....
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Query Sequence  . . . . . . . . . . . . . . MPALRAAFEQR. . . . . . . . . . . . GVPCWS. . . . TSGNEADDLAATLAVKVTQA. . . . . GHQATIVS
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Template Sequence  RRFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPG. EGEHKIMDYIRYMKTQPDYDPNTRHCLYG
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   118.120.........130.........140.........150.........160....... ..170.........180.........190......
 
   126...130.... .....140. ........150.........160...
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Query Sequence  TDKGYCQLL. . . . SPTLRIR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DYFQKRWLDAPFIDKEFGVQPQ
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Template Sequence  LDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLI. . . . . . . D
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   204.....210.........220.........230.........240.........250.........260.........270..... .
 
   164.....170.........180.........190.........200.....
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Query Sequence  QLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYE
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Template Sequence  DWVLMGFLVG. . NDFIPHLPCLHISS. . . . . . . . NALPLLYR
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   277..280...... ...290.........300 ........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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