Job Description P38506 Confidence 52.55% Date Thu Jan 5 11:58:11 GMT 2012 Rank 107 Aligned Residues 87 % Identity 17% Template c2j4dA_ PDB info PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana Resolution 1.9 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A	G	R	P	P	M	P	E	E	L	H	D	E	M	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V
Query Conservation
Alig confidence																				.	.	.	.																																															.
Template Conservation																				.	.	.	.																																															.
Template Sequence		L	Y	K	A	W	S	S	S	D	T	I	L	P	V	Y	C	L	D	.	.	.	.	P	R	L	F	H	T	T	H	F	F	N	F	P	K	T	G	A	L	R	G	G	F	L	M	E	C	L	V	D	L	R	K	N	L	M	K	R	G	L	N	L	L	I	R	S	G	.	K	P	E	E	I	L	P	S	L	A	K
Template Known Secondary structure								T		S										.	.	.	.	G	G	G	G	S	B		T	T	T			B	S	S																						T	T								S	.
Template Predicted Secondary structure																				.	.	.	.																																															.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	T	Q	A	G	H	Q	A	T	I	V	S	T	D
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence		D	F	.	.	.	G	A	R	T	V	F	A	H	K	E
Template Known Secondary structure				.	.	.	T		S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		133	.				.	.	.	.	.	140	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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