Job Description P38506 Confidence 100.00% Date Thu Jan 5 11:58:11 GMT 2012 Rank 3 Aligned Residues 241 % Identity 16% Template c2ihnA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.												.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		A	V	H	L	L	I	V	D	A	L	N	L	I	R	R	I	H	A	V	Q	G	S	P	.	.	.	.	.	.	.	.	.	.	.	C	V	E	T	C	Q	H	A	L	D	Q	L	I	M	H	S	Q	P	T	H	A	V	A	V	F	D	D	E	.	N	R	S	S	G	W	R	H	Q	R	L	P	D	Y	K	A	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																													.				.	.
Template Conservation																																																																				.	.
Template Sequence		K	E	G	I	C	L	I	D	F	S	Q	I	A	L	S	T	A	L	V	N	F	P	D	K	E	K	I	N	L	S	M	V	R	H	L	I	L	N	S	I	K	F	N	V	K	K	A	K	T	L	G	Y	T	K	I	V	L	C	I	D	N	A	K	S	G	Y	.	.	W	R	R	D	F	A	Y	Y	Y	K	K	N
Template Known Secondary structure		S												T								S		S	S	S																								T	T	T												T	T			.	.							T	T	T	T	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure														.	.																																																						.
Query SS confidence														.	.																																																						.
Query Sequence		R	P	P	M	P	E	E	L	H	D	E	M	.	.	P	A	L	R	A	A	F	E	Q	R	G	V	P	C	W	S	T	S	G	N	E	A	D	D	L	A	A	T	L	A	V	K	V	T	Q	A	G	H	Q	A	T	I	V	S	T	D	K	G	Y	C	Q	L	L	.	S	P	T	L	R	I	R	D	Y	F	Q	K
Query Conservation														.	.																																																						.
Alig confidence														.	.																																																						.
Template Conservation
Template Sequence		R	S	T	W	D	W	E	G	Y	F	E	S	S	H	K	V	I	D	E	L	K	A	Y	M	P	Y	I	V	M	D	I	D	K	Y	E	A	N	D	H	I	A	V	L	V	K	K	F	S	L	E	G	H	K	I	L	I	I	S	S	D	G	D	F	T	Q	L	H	K	Y	P	N	V	K	Q	W	S	P	M	H	K
Template Known Secondary structure					S																				S	S	S						T	T																		T										G	G	G	G	G	G	G	G	S	S	S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		R	W	L	D	A	P	F	I	D	K	E	F	G	V	Q	P	Q	Q	L	P	D	Y	W	G	L	A	G	I	S	S	S	K	V	P	G	V	A	G	I	G	P	K	S	A	T	Q	L	L	V	E	.	.	.	.	.	.	F	Q	S	L	E	G	I	Y	E	N	L	D	A	V	A	E	K	W	R	K	K	L	E	T
Query Conservation																																																				.	.	.	.	.	.
Alig confidence							.	.	.	.	.					.																																				.	.	.	.	.	.
Template Conservation							.	.	.	.	.					.
Template Sequence		K	W	V	K	I	.	.	.	.	.	K	S	G	S	.	A	E	I	D	C	M	T	K	I	L	K	G	D	K	K	D	N	V	A	S	V	K	V	R	S	D	F	W	F	T	R	V	E	G	E	R	T	P	S	M	K	T	S	I	V	E	A	I	A	N	D	R	E	Q	A	K	V	L	L	T	E	S	E	Y	N
Template Known Secondary structure		S	B				.	.	.	.	.		S	S		.													B	G	G	G	T	B			T	T	S		T	T							T	T																		G	G	G					S
Template Predicted Secondary structure							.	.	.	.	.					.
Template SS confidence
		176	.	.	.	180						.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	E	M	A	F	L	C	R	D	I	A	R	L	Q	T	D	L	H	I	D	G	N	L	Q	Q	L	R	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	K	E	N	L	V	L	I	D	F	D	Y	I	P	D	N	I	A	S	N	I	V	N	Y	Y	N	S	Y	K
Template Known Secondary structure												G	G	G	S														T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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